Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 108 lcl|Aclame:protein:vir:106998|NCBI_annot:major HHsearch (proba=100.00%)
Portal 104 lcl|Aclame:protein:vir:106999|NCBI_annot:portal HHsearch (proba=100.00%)
TermL 100 lcl|Aclame:protein:vir:106989|NCBI_annot:terminase Blast (e-value=0)
MTP 103 lcl|Aclame:protein:vir:106918|NCBI_annot:tail Blast (e-value=1e-121)
Sheath 102 lcl|Aclame:protein:vir:106984|NCBI_annot:contractile HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 93 lcl|Aclame:protein:vir:106985|NCBI_annot:neck HHsearch (proba=100.00%)
Hc2 94 lcl|Aclame:protein:vir:106986|NCBI_annot:neck HHsearch (proba=100.00%)
Tc2 95 lcl|Aclame:protein:vir:106987|NCBI_annot:proximal HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:106998
protein:vir:103181
protein:vir:104549
S-PM2
Syn9
P-SSM4
100 %
66 %
66 %
Portal protein:vir:106999
protein:vir:103177
protein:vir:104892
S-PM2
Syn9
P-SSM2
100 %
59 %
56 %
TermL protein:vir:106989
protein:vir:104946
protein:vir:103169
S-PM2
P-SSM2
Syn9
100 %
70 %
67 %
MTP protein:vir:106918
protein:vir:104771
protein:vir:104504
S-PM2
P-SSM2
P-SSM4
100 %
43 %
41 %
Sheath protein:vir:106984
protein:vir:104858
protein:vir:104477
S-PM2
P-SSM2
P-SSM4
100 %
38 %
38 %
Ad2 protein:vir:106985
protein:vir:104694
protein:vir:103004
S-PM2
P-SSM2
Syn9
100 %
50 %
37 %
Hc2 protein:vir:106986
protein:vir:104476
protein:vir:103005
S-PM2
P-SSM4
Syn9
100 %
46 %
45 %
Tc2 protein:vir:106987
protein:vir:103006
protein:vir:104479
S-PM2
Syn9
P-SSM4
100 %
54 %
50 %