Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 10 lcl|NC_020488.1_cdsid_YP_007518352.1 HHsearch (proba=100.00%)
Portal 12 lcl|NC_020488.1_cdsid_YP_007518354.1 HHsearch (proba=100.00%)
TermL 13 lcl|NC_020488.1_cdsid_YP_007518355.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 8 lcl|NC_020488.1_cdsid_YP_007518350.1 HHsearch (proba=100.00%)
Hc3 7 lcl|NC_020488.1_cdsid_YP_007518349.1 HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:108303
protein:vir:105374
protein:vir:174
BA3
Sf6
HK620
60 %
21 %
21 %
Portal protein:vir:108295
protein:vir:105429
protein:vir:172
BA3
Sf6
HK620
52 %
25 %
24 %
TermL protein:vir:108299
protein:vir:105593
protein:vir:93626
BA3
F116
Bcep22
70 %
18 %
17 %
Ad3 protein:vir:108311
protein:vir:2108
protein:vir:100918
BA3
P22
ST104
34 %
21 %
21 %
Hc3 protein:vir:108312
protein:vir:3529
protein:vir:2109
BA3
APSE-1
P22
42 %
20 %
19 %