Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 34 lcl|NC_020197.1_cdsid_YP_007392281.1 HHsearch (proba=100.00%)
Portal 30 lcl|NC_020197.1_cdsid_YP_007392277.1 HHsearch (proba=100.00%)
TermL 29 lcl|NC_020197.1_cdsid_YP_007392276.1 Blast (e-value=0)
MTP 40 lcl|NC_020197.1_cdsid_YP_007392287.1 Blast (e-value=1e-93)
Sheath NOT FOUND
Ad1 36 lcl|NC_020197.1_cdsid_YP_007392283.1 HHsearch (proba=100.00%)
Hc1 37 lcl|NC_020197.1_cdsid_YP_007392284.1 HHsearch (proba=100.00%)
Ne1 38 lcl|NC_020197.1_cdsid_YP_007392285.1 HHsearch (proba=100.00%)
Tc1 39 lcl|NC_020197.1_cdsid_YP_007392286.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:4902
protein:vir:2736
protein:vir:96490
Sfi11
O1205
2972
97 %
96 %
93 %
Portal protein:vir:4898
protein:vir:96494
protein:vir:2732
Sfi11
2972
O1205
99 %
92 %
92 %
TermL protein:vir:4897
protein:vir:2731
protein:vir:96495
Sfi11
O1205
2972
99 %
98 %
94 %
MTP protein:vir:4908
protein:vir:2742
protein:vir:96484
Sfi11
O1205
2972
99 %
99 %
92 %
Ad1 protein:vir:2738
protein:vir:96488
protein:vir:4904
O1205
2972
Sfi11
96 %
93 %
85 %
Hc1 protein:vir:4905
protein:vir:2739
protein:vir:96487
Sfi11
O1205
2972
100 %
92 %
84 %
Ne1 protein:vir:4906
protein:vir:2740
protein:vir:96486
Sfi11
O1205
2972
100 %
100 %
84 %
Tc1 protein:vir:4907
protein:vir:2741
protein:vir:96485
Sfi11
O1205
2972
100 %
95 %
91 %