Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phAPEC8 | Genbank acc : NC_020079

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 269

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	152	lcl\|NC_020079.1_cdsid_YP_007348520.1	HHsearch (proba=100.00%)
Portal	148	lcl\|NC_020079.1_cdsid_YP_007348516.1	HHsearch (proba=100.00%)
TermL	147	lcl\|NC_020079.1_cdsid_YP_007348515.1	Blast (e-value=1e-65)
MTP	NOT FOUND
Sheath	158	lcl\|NC_020079.1_cdsid_YP_007348526.1	HHsearch (proba=100.00%)
Ad1	154	lcl\|NC_020079.1_cdsid_YP_007348522.1	HHsearch (proba=90.90%)
Hc1	156	lcl\|NC_020079.1_cdsid_YP_007348524.1	HHsearch (proba=96.81%)
Ne1	155	lcl\|NC_020079.1_cdsid_YP_007348523.1	HHsearch (proba=100.00%)
Tc1	157	lcl\|NC_020079.1_cdsid_YP_007348525.1	HHsearch (proba=94.55%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:10324 protein:vir:95258 protein:vir:96490	VHML Felix 01 2972	23 % 20 % 15 %
Portal	protein:vir:95254 protein:vir:78161 protein:vir:108215	Felix 01 Min1 Giles	30 % 21 % 19 %
TermL	protein:vir:95253 protein:vir:103223 protein:vir:97250	Felix 01 JK06 M6	31 % 20 % 17 %
Sheath	protein:vir:80052 protein:vir:95263 protein:vir:5260	B054 Felix 01 Aaphi23	23 % 19 % 18 %
Ad1	protein:vir:95259 protein:vir:104344 protein:vir:79640	Felix 01 RTP TLS	21 % 23 % 16 %
Hc1	protein:vir:5258 protein:vir:95261	Aaphi23 Felix 01	18 % 24 %
Ne1	protein:vir:99546 protein:vir:107757 protein:vir:78607	BcepF1 BcepB1A BcepNY3	23 % 22 % 22 %
Tc1	protein:vir:80105 protein:vir:3972 protein:vir:99537	B054 ul36 Lj928	17 % 13 % 13 %