Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 39 lcl|NC_019915.1_cdsid_YP_007236660.1 HHsearch (proba=100.00%)
Portal 37 lcl|NC_019915.1_cdsid_YP_007236658.1 HHsearch (proba=100.00%)
TermL 35 lcl|NC_019915.1_cdsid_YP_007236656.1 Blast (e-value=1e-128)
MTP 44 lcl|NC_019915.1_cdsid_YP_007236665.1 Blast (e-value=7e-26)
Sheath NOT FOUND
Ad1 40 lcl|NC_019915.1_cdsid_YP_007236661.1 HHsearch (proba=100.00%)
Hc1 41 lcl|NC_019915.1_cdsid_YP_007236662.1 HHsearch (proba=100.00%)
Ne1 42 lcl|NC_019915.1_cdsid_YP_007236663.1 HHsearch (proba=100.00%)
Tc1 43 lcl|NC_019915.1_cdsid_YP_007236664.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:100172
protein:vir:100884
protein:vir:9704
phi AT3
Lc-Nu
315.2
42 %
40 %
38 %
Portal protein:vir:9702
protein:vir:81095
protein:vir:79984
315.2
tp310-1
tp310-3
29 %
29 %
29 %
TermL protein:vir:3867
protein:vir:9699
protein:vir:81099
A2
315.2
tp310-1
43 %
40 %
37 %
MTP protein:vir:4706
protein:vir:81108
protein:vir:80010
phiPV83
tp310-1
tp310-3
33 %
31 %
31 %
Ad1 protein:vir:7410
protein:vir:93592
protein:vir:3992
P335
phi 4795
BK5-T
26 %
25 %
25 %
Hc1 protein:vir:81103
protein:vir:79989
protein:vir:98341
tp310-1
tp310-3
phiPVL(108)
31 %
31 %
31 %
Ne1 protein:vir:78644
protein:vir:96973
protein:vir:94419
tp310-2
42e
47
45 %
45 %
45 %
Tc1 protein:vir:101303
protein:vir:100675
protein:vir:9514
phiNM3
77
phiN315
41 %
41 %
41 %