Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 27 lcl|NC_019541.1_cdsid_YP_007010608.1 HHsearch (proba=100.00%)
Portal 21 lcl|NC_019541.1_cdsid_YP_007010602.1 HHsearch (proba=100.00%)
TermL 20 lcl|NC_019541.1_cdsid_YP_007010601.1 Blast (e-value=6e-39)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 29 lcl|NC_019541.1_cdsid_YP_007010610.1 HHsearch (proba=99.18%)
Hc1 30 lcl|NC_019541.1_cdsid_YP_007010611.1 HHsearch (proba=99.92%)
Ne1 32 lcl|NC_019541.1_cdsid_YP_007010613.1 HHsearch (proba=100.00%)
Tc1 33 lcl|NC_019541.1_cdsid_YP_007010614.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:96792
protein:vir:95131
protein:vir:78387
phiHSIC
PA73
SETP3
56 %
27 %
17 %
Portal protein:vir:95149
protein:vir:80453
protein:vir:95014
PA73
BcepGomr
KS7
33 %
32 %
28 %
TermL protein:vir:5248
protein:vir:80106
protein:vir:104336
Aaphi23
B054
RTP
27 %
26 %
26 %
Ad1 protein:vir:95176
protein:vir:94955
protein:vir:80389
PA73
Xp15
BcepGomr
20 %
22 %
17 %
Hc1 protein:vir:97237
protein:vir:104346
protein:vir:95145
M6
RTP
PA73
15 %
14 %
13 %
Ne1 protein:vir:94944
protein:vir:78380
protein:vir:94994
Xp15
SETP3
KS7
32 %
31 %
28 %
Tc1 protein:vir:94921
protein:vir:97211
protein:vir:104348
Xp15
M6
RTP
25 %
20 %
20 %