Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 109 lcl|NC_019444.1_cdsid_YP_007001835.1 HHsearch (proba=100.00%)
Portal 104 lcl|NC_019444.1_cdsid_YP_007001830.1 HHsearch (proba=100.00%)
TermL 101 lcl|NC_019444.1_cdsid_YP_007001827.1 Blast (e-value=0)
MTP 103 lcl|NC_019444.1_cdsid_YP_007001829.1 Blast (e-value=1e-74)
Sheath 102 lcl|NC_019444.1_cdsid_YP_007001828.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 88 lcl|NC_019444.1_cdsid_YP_007001814.1 HHsearch (proba=100.00%)
Hc2 89 lcl|NC_019444.1_cdsid_YP_007001815.1 HHsearch (proba=100.00%)
Tc2 90 lcl|NC_019444.1_cdsid_YP_007001816.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:103181
protein:vir:104549
protein:vir:106998
Syn9
P-SSM4
S-PM2
93 %
86 %
66 %
Portal protein:vir:103177
protein:vir:104500
protein:vir:104892
Syn9
P-SSM4
P-SSM2
90 %
80 %
57 %
TermL protein:vir:103169
protein:vir:104536
protein:vir:104946
Syn9
P-SSM4
P-SSM2
88 %
81 %
68 %
MTP protein:vir:104504
protein:vir:103176
protein:vir:104771
P-SSM4
Syn9
P-SSM2
66 %
58 %
39 %
Sheath protein:vir:103168
protein:vir:104477
protein:vir:104858
Syn9
P-SSM4
P-SSM2
73 %
70 %
39 %
Ad2 protein:vir:103004
protein:vir:104585
protein:vir:104694
Syn9
P-SSM4
P-SSM2
83 %
76 %
37 %
Hc2 protein:vir:103005
protein:vir:104476
protein:vir:106986
Syn9
P-SSM4
S-PM2
88 %
66 %
44 %
Tc2 protein:vir:103006
protein:vir:104479
protein:vir:104695
Syn9
P-SSM4
P-SSM2
82 %
72 %
53 %