Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 21 lcl|NC_018083.1_cdsid_YP_006488636.1 HHsearch (proba=100.00%)
Portal 17 lcl|NC_018083.1_cdsid_YP_006488632.1 HHsearch (proba=100.00%)
TermL NOT FOUND
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 16 lcl|NC_018083.1_cdsid_YP_006488631.1 HHsearch (proba=100.00%)

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79399
protein:vir:15
protein:vir:5202
Av-1
GA-1
PZA
25 %
24 %
24 %
Portal protein:vir:79400
protein:vir:17
protein:vir:4732
Av-1
GA-1
Cp-1
30 %
30 %
30 %
Ad4 protein:vir:5206
protein:vir:18
protein:vir:122
PZA
GA-1
B103
31 %
27 %
27 %