Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 15 lcl|Aclame:protein:vir:15|NCBI_annot:major HHsearch (proba=100.00%)
Portal 17 lcl|Aclame:protein:vir:17|NCBI_annot:head-tail HHsearch (proba=100.00%)
TermL NOT FOUND
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 18 lcl|Aclame:protein:vir:18|NCBI_annot:lower HHsearch (proba=100.00%)

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:15
protein:vir:118
protein:vir:5202
GA-1
B103
PZA
97 %
53 %
51 %
Portal protein:vir:17
protein:vir:5205
protein:vir:121
GA-1
PZA
B103
100 %
54 %
53 %
Ad4 protein:vir:18
protein:vir:5206
protein:vir:122
GA-1
PZA
B103
100 %
36 %
36 %