Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : S-SSM7 | Genbank acc : NC_015287

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 319

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	148	lcl\|NC_015287.1_cdsid_YP_004324201.1	HHsearch (proba=100.00%)
Portal	144	lcl\|NC_015287.1_cdsid_YP_004324197.1	HHsearch (proba=100.00%)
TermL	140	lcl\|NC_015287.1_cdsid_YP_004324193.1	Blast (e-value=0)
MTP	143	lcl\|NC_015287.1_cdsid_YP_004324196.1	Blast (e-value=4e-56)
Sheath	142	lcl\|NC_015287.1_cdsid_YP_004324195.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	135	lcl\|NC_015287.1_cdsid_YP_004324188.1	HHsearch (proba=100.00%)
Hc2	136	lcl\|NC_015287.1_cdsid_YP_004324189.1	HHsearch (proba=100.00%)
Tc2	137	lcl\|NC_015287.1_cdsid_YP_004324190.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104915 protein:vir:103181 protein:vir:104549	P-SSM2 Syn9 P-SSM4	75 % 64 % 63 %
Portal	protein:vir:104892 protein:vir:106999 protein:vir:103177	P-SSM2 S-PM2 Syn9	64 % 55 % 55 %
TermL	protein:vir:104946 protein:vir:106989 protein:vir:104536	P-SSM2 S-PM2 P-SSM4	73 % 72 % 70 %
MTP	protein:vir:104771 protein:vir:104504 protein:vir:103176	P-SSM2 P-SSM4 Syn9	57 % 49 % 46 %
Sheath	protein:vir:104858 protein:vir:104477 protein:vir:106984	P-SSM2 P-SSM4 S-PM2	48 % 40 % 36 %
Ad2	protein:vir:104694 protein:vir:106985 protein:vir:103004	P-SSM2 S-PM2 Syn9	57 % 44 % 42 %
Hc2	protein:vir:104739 protein:vir:106986 protein:vir:104476	P-SSM2 S-PM2 P-SSM4	36 % 31 % 26 %
Tc2	protein:vir:104695 protein:vir:103006 protein:vir:104479	P-SSM2 Syn9 P-SSM4	50 % 48 % 42 %