Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : P-RSM4 | Genbank acc : NC_015283

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 239

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	138	lcl\|NC_015283.1_cdsid_YP_004323268.1	HHsearch (proba=100.00%)
Portal	134	lcl\|NC_015283.1_cdsid_YP_004323264.1	HHsearch (proba=100.00%)
TermL	131	lcl\|NC_015283.1_cdsid_YP_004323261.1	Blast (e-value=0)
MTP	133	lcl\|NC_015283.1_cdsid_YP_004323263.1	Blast (e-value=1e-96)
Sheath	132	lcl\|NC_015283.1_cdsid_YP_004323262.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	113	lcl\|NC_015283.1_cdsid_YP_004323243.1	HHsearch (proba=100.00%)
Hc2	114	lcl\|NC_015283.1_cdsid_YP_004323244.1	HHsearch (proba=100.00%)
Tc2	115	lcl\|NC_015283.1_cdsid_YP_004323245.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103181 protein:vir:104549 protein:vir:106998	Syn9 P-SSM4 S-PM2	84 % 84 % 66 %
Portal	protein:vir:103177 protein:vir:104500 protein:vir:106999	Syn9 P-SSM4 S-PM2	84 % 82 % 59 %
TermL	protein:vir:104536 protein:vir:103169 protein:vir:104946	P-SSM4 Syn9 P-SSM2	84 % 83 % 70 %
MTP	protein:vir:104504 protein:vir:103176 protein:vir:104771	P-SSM4 Syn9 P-SSM2	84 % 70 % 46 %
Sheath	protein:vir:104477 protein:vir:103168 protein:vir:104858	P-SSM4 Syn9 P-SSM2	74 % 66 % 39 %
Ad2	protein:vir:103004 protein:vir:104585 protein:vir:104694	Syn9 P-SSM4 P-SSM2	80 % 78 % 36 %
Hc2	protein:vir:104476 protein:vir:103005 protein:vir:106986	P-SSM4 Syn9 S-PM2	80 % 64 % 44 %
Tc2	protein:vir:103006 protein:vir:104479 protein:vir:104695	Syn9 P-SSM4 P-SSM2	78 % 69 % 54 %