Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 17 lcl|NC_015270.1_cdsid_YP_004306645.1 HHsearch (proba=100.00%)
Portal 15 lcl|NC_015270.1_cdsid_YP_004306643.1 HHsearch (proba=100.00%)
TermL 13 lcl|NC_015270.1_cdsid_YP_004306641.1 Blast (e-value=1e-118)
MTP 23 lcl|NC_015270.1_cdsid_YP_004306651.1 Blast (e-value=4e-23)
Sheath NOT FOUND
Ad1 19 lcl|NC_015270.1_cdsid_YP_004306647.1 HHsearch (proba=100.00%)
Hc1 20 lcl|NC_015270.1_cdsid_YP_004306648.1 HHsearch (proba=99.96%)
Ne1 21 lcl|NC_015270.1_cdsid_YP_004306649.1 HHsearch (proba=100.00%)
Tc1 22 lcl|NC_015270.1_cdsid_YP_004306650.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3870
protein:vir:100884
protein:vir:9704
A2
Lc-Nu
315.2
35 %
34 %
33 %
Portal protein:vir:79984
protein:vir:9408
protein:vir:3868
tp310-3
phi 13
A2
28 %
28 %
28 %
TermL protein:vir:9699
protein:vir:3867
protein:vir:81099
315.2
A2
tp310-1
41 %
39 %
37 %
MTP protein:vir:78324
protein:vir:98634
protein:vir:9649
B025
phi3396
315.1
30 %
26 %
26 %
Ad1 protein:vir:102158
protein:vir:81159
protein:vir:102083
phiSM101
Geobacillus virus E2
Fah
31 %
29 %
28 %
Hc1 protein:vir:80342
protein:vir:100244
protein:vir:1436
phi644-2
Bcep176
phiE125
30 %
27 %
27 %
Ne1 protein:vir:3873
protein:vir:81106
protein:vir:79988
A2
tp310-1
tp310-3
28 %
26 %
26 %
Tc1 protein:vir:101303
protein:vir:100675
protein:vir:9514
phiNM3
77
phiN315
22 %
22 %
22 %