Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiCD6356 | Genbank acc : NC_015262

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 59

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|NC_015262.1_cdsid_YP_004306106.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_015262.1_cdsid_YP_004306104.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_015262.1_cdsid_YP_004306103.1	Blast (e-value=1e-146)
MTP	11	lcl\|NC_015262.1_cdsid_YP_004306112.1	Blast (e-value=1e-25)
Sheath	NOT FOUND
Ad1	6	lcl\|NC_015262.1_cdsid_YP_004306107.1	HHsearch (proba=100.00%)
Hc1	7	lcl\|NC_015262.1_cdsid_YP_004306108.1	HHsearch (proba=99.96%)
Ne1	9	lcl\|NC_015262.1_cdsid_YP_004306110.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_015262.1_cdsid_YP_004306111.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:4092 protein:vir:95963 protein:vir:78350	2389 2638A B025	49 % 30 % 29 %
Portal	protein:vir:4089 protein:vir:95965 protein:vir:101289	2389 2638A phiNM3	40 % 27 % 25 %
TermL	protein:vir:4088 protein:vir:78311 protein:vir:95986	2389 B025 2638A	47 % 41 % 38 %
MTP	protein:vir:102037 protein:vir:102845 protein:vir:107619	Fah Cherry Gamma	38 % 38 % 38 %
Ad1	protein:vir:4093 protein:vir:78326 protein:vir:98637	2389 B025 phi3396	34 % 24 % 20 %
Hc1	protein:vir:4094 protein:vir:100244 protein:vir:81177	2389 Bcep176 Geobacillus virus E2	25 % 24 % 22 %
Ne1	protein:vir:102085 protein:vir:102875 protein:vir:107568	Fah Cherry Gamma	34 % 34 % 34 %
Tc1	protein:vir:1387 protein:vir:81093 protein:vir:80001	phi3626 tp310-1 tp310-3	41 % 23 % 23 %