Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP NOT FOUND
Portal 17 lcl|NC_015210.1_cdsid_YP_004286258.1 HHsearch (proba=100.00%)
TermL 9 lcl|NC_015210.1_cdsid_YP_004286250.1 Blast (e-value=1e-149)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 28 lcl|NC_015210.1_cdsid_YP_004286269.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 31 lcl|NC_015210.1_cdsid_YP_004286272.1 HHsearch (proba=100.00%)
Tc1 29 lcl|NC_015210.1_cdsid_YP_004286270.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
Portal protein:vir:99088
protein:vir:8654
protein:vir:102426
Qyrzula
Rosebush
Pipefish
54 %
54 %
53 %
TermL protein:vir:99083
protein:vir:8649
protein:vir:102402
Qyrzula
Rosebush
Pipefish
51 %
51 %
49 %
Ad1 protein:vir:102438
protein:vir:99098
protein:vir:8666
Pipefish
Qyrzula
Rosebush
51 %
51 %
51 %
Ne1 protein:vir:102441
protein:vir:97982
protein:vir:107545
Pipefish
Orion
PG1
51 %
49 %
49 %
Tc1 protein:vir:8667
protein:vir:99099
protein:vir:106039
Rosebush
Qyrzula
Cooper
54 %
50 %
50 %