Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 105 lcl|NC_013085.1_cdsid_YP_003097339.1 HHsearch (proba=100.00%)
Portal 109 lcl|NC_013085.1_cdsid_YP_003097343.1 HHsearch (proba=100.00%)
TermL 113 lcl|NC_013085.1_cdsid_YP_003097347.1 Blast (e-value=0)
MTP 110 lcl|NC_013085.1_cdsid_YP_003097344.1 Blast (e-value=2e-73)
Sheath 111 lcl|NC_013085.1_cdsid_YP_003097345.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 129 lcl|NC_013085.1_cdsid_YP_003097363.1 HHsearch (proba=100.00%)
Hc2 128 lcl|NC_013085.1_cdsid_YP_003097362.1 HHsearch (proba=100.00%)
Tc2 127 lcl|NC_013085.1_cdsid_YP_003097361.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:106998
protein:vir:103181
protein:vir:104549
S-PM2
Syn9
P-SSM4
72 %
63 %
63 %
Portal protein:vir:106999
protein:vir:103177
protein:vir:104500
S-PM2
Syn9
P-SSM4
74 %
61 %
57 %
TermL protein:vir:106989
protein:vir:104946
protein:vir:104536
S-PM2
P-SSM2
P-SSM4
76 %
68 %
67 %
MTP protein:vir:106918
protein:vir:104771
protein:vir:104504
S-PM2
P-SSM2
P-SSM4
65 %
45 %
42 %
Sheath protein:vir:106984
protein:vir:104477
protein:vir:104858
S-PM2
P-SSM4
P-SSM2
56 %
41 %
37 %
Ad2 protein:vir:106985
protein:vir:104694
protein:vir:103004
S-PM2
P-SSM2
Syn9
53 %
48 %
37 %
Hc2 protein:vir:106986
protein:vir:103005
protein:vir:104476
S-PM2
Syn9
P-SSM4
64 %
57 %
44 %
Tc2 protein:vir:106987
protein:vir:103006
protein:vir:104479
S-PM2
Syn9
P-SSM4
70 %
49 %
48 %