Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 36 lcl|NC_012756.1_cdsid_YP_002925169.1 HHsearch (proba=100.00%)
Portal 34 lcl|NC_012756.1_cdsid_YP_002925167.1 HHsearch (proba=100.00%)
TermL 32 lcl|NC_012756.1_cdsid_YP_002925165.1 Blast (e-value=1e-173)
MTP 42 lcl|NC_012756.1_cdsid_YP_002925175.1 Blast (e-value=5e-44)
Sheath NOT FOUND
Ad1 38 lcl|NC_012756.1_cdsid_YP_002925171.1 HHsearch (proba=100.00%)
Hc1 39 lcl|NC_012756.1_cdsid_YP_002925172.1 HHsearch (proba=100.00%)
Ne1 40 lcl|NC_012756.1_cdsid_YP_002925173.1 HHsearch (proba=100.00%)
Tc1 41 lcl|NC_012756.1_cdsid_YP_002925174.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:962
protein:vir:100172
protein:vir:100884
bIL285
phi AT3
Lc-Nu
37 %
29 %
29 %
Portal protein:vir:80134
protein:vir:95378
protein:vir:960
bacteriophage bv1
GBSV1
bIL285
53 %
51 %
47 %
TermL protein:vir:959
protein:vir:80117
protein:vir:95379
bIL285
bacteriophage bv1
GBSV1
53 %
50 %
50 %
MTP protein:vir:968
protein:vir:80149
protein:vir:95370
bIL285
bacteriophage bv1
GBSV1
45 %
40 %
40 %
Ad1 protein:vir:964
protein:vir:95374
protein:vir:80144
bIL285
GBSV1
bacteriophage bv1
48 %
45 %
44 %
Hc1 protein:vir:95373
protein:vir:80114
protein:vir:965
GBSV1
bacteriophage bv1
bIL285
36 %
35 %
29 %
Ne1 protein:vir:966
protein:vir:95372
protein:vir:80116
bIL285
GBSV1
bacteriophage bv1
40 %
37 %
34 %
Tc1 protein:vir:80109
protein:vir:95371
protein:vir:967
bacteriophage bv1
GBSV1
bIL285
35 %
32 %
32 %