Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : GBSV1 | Genbank acc : NC_008376 | Aclame index mge :1567

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 54

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	22	lcl\|Aclame:protein:vir:95376\|NCBI_annot:phage	HHsearch (proba=100.00%)
Portal	20	lcl\|Aclame:protein:vir:95378\|NCBI_annot:phage	HHsearch (proba=100.00%)
TermL	19	lcl\|Aclame:protein:vir:95379\|NCBI_annot:phage	Blast (e-value=0)
MTP	28	lcl\|Aclame:protein:vir:95370\|NCBI_annot:major	Blast (e-value=1e-114)
Sheath	NOT FOUND
Ad1	24	lcl\|Aclame:protein:vir:95374\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Hc1	25	lcl\|Aclame:protein:vir:95373\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Ne1	26	lcl\|Aclame:protein:vir:95372\|NCBI_annot:hypothetical	HHsearch (proba=100.00%)
Tc1	27	lcl\|Aclame:protein:vir:95371\|NCBI_annot:aminopeptidase\|genbank:acc:YP_764481;genbank:gi:115334635;ge	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:95376 protein:vir:80128 protein:vir:962	GBSV1 bacteriophage bv1 bIL285	100 % 38 % 20 %
Portal	protein:vir:95378 protein:vir:80134 protein:vir:960	GBSV1 bacteriophage bv1 bIL285	100 % 84 % 46 %
TermL	protein:vir:95379 protein:vir:80117 protein:vir:959	GBSV1 bacteriophage bv1 bIL285	100 % 100 % 50 %
MTP	protein:vir:95370 protein:vir:80149 protein:vir:968	GBSV1 bacteriophage bv1 bIL285	100 % 95 % 45 %
Ad1	protein:vir:95374 protein:vir:80144 protein:vir:964	GBSV1 bacteriophage bv1 bIL285	100 % 92 % 43 %
Hc1	protein:vir:95373 protein:vir:80114 protein:vir:965	GBSV1 bacteriophage bv1 bIL285	100 % 84 % 33 %
Ne1	protein:vir:95372 protein:vir:80116 protein:vir:966	GBSV1 bacteriophage bv1 bIL285	100 % 84 % 41 %
Tc1	protein:vir:95371 protein:vir:80109 protein:vir:81158	GBSV1 bacteriophage bv1 Geobacillus virus E2	100 % 81 % 47 %