Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 16 lcl|NC_012419.1_cdsid_YP_002727888.1 HHsearch (proba=100.00%)
Portal 18 lcl|NC_012419.1_cdsid_YP_002727890.1 HHsearch (proba=100.00%)
TermL 20 lcl|NC_012419.1_cdsid_YP_002727892.1 Blast (e-value=1e-118)
MTP 10 lcl|NC_012419.1_cdsid_YP_002727882.1 Blast (e-value=4e-25)
Sheath NOT FOUND
Ad1 14 lcl|NC_012419.1_cdsid_YP_002727886.1 HHsearch (proba=99.96%)
Hc1 13 lcl|NC_012419.1_cdsid_YP_002727885.1 HHsearch (proba=100.00%)
Ne1 12 lcl|NC_012419.1_cdsid_YP_002727884.1 HHsearch (proba=100.00%)
Tc1 11 lcl|NC_012419.1_cdsid_YP_002727883.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3870
protein:vir:100884
protein:vir:9704
A2
Lc-Nu
315.2
34 %
34 %
33 %
Portal protein:vir:81095
protein:vir:79984
protein:vir:98396
tp310-1
tp310-3
phiPVL(108)
28 %
28 %
28 %
TermL protein:vir:9699
protein:vir:3867
protein:vir:81099
315.2
A2
tp310-1
41 %
39 %
37 %
MTP protein:vir:78324
protein:vir:98634
protein:vir:9649
B025
phi3396
315.1
31 %
29 %
28 %
Ad1 protein:vir:81159
protein:vir:102083
protein:vir:102863
Geobacillus virus E2
Fah
Cherry
33 %
30 %
30 %
Hc1 protein:vir:80342
protein:vir:100244
protein:vir:1436
phi644-2
Bcep176
phiE125
30 %
29 %
28 %
Ne1 protein:vir:3873
protein:vir:81106
protein:vir:79988
A2
tp310-1
tp310-3
28 %
26 %
26 %
Tc1 protein:vir:101303
protein:vir:100675
protein:vir:9514
phiNM3
77
phiN315
21 %
21 %
21 %