Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 19 lcl|NC_011039.1_cdsid_YP_002003377.1 HHsearch (proba=94.27%)
Portal 8 lcl|NC_011039.1_cdsid_YP_002003366.1 HHsearch (proba=100.00%)
TermL 7 lcl|NC_011039.1_cdsid_YP_002003365.1 Blast (e-value=0)
MTP 27 lcl|NC_011039.1_cdsid_YP_002003385.1 Blast (e-value=1e-113)
Sheath NOT FOUND
Ad1 21 lcl|NC_011039.1_cdsid_YP_002003379.1 HHsearch (proba=100.00%)
Hc1 22 lcl|NC_011039.1_cdsid_YP_002003380.1 HHsearch (proba=100.00%)
Ne1 23 lcl|NC_011039.1_cdsid_YP_002003381.1 HHsearch (proba=100.00%)
Tc1 24 lcl|NC_011039.1_cdsid_YP_002003382.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:99920
protein:vir:101607
protein:vir:78223
Halo
11b
Bethlehem
12 %
9 %
10 %
Portal protein:vir:7430
protein:vir:102239
protein:vir:101494
Barnyard
PBI1
PLot
50 %
33 %
33 %
TermL protein:vir:7429
protein:vir:102238
protein:vir:101493
Barnyard
PBI1
PLot
56 %
41 %
40 %
MTP protein:vir:7453
protein:vir:102193
protein:vir:101512
Barnyard
PBI1
PLot
71 %
57 %
57 %
Ad1 protein:vir:7446
protein:vir:102188
protein:vir:101506
Barnyard
PBI1
PLot
51 %
32 %
32 %
Hc1 protein:vir:7447
protein:vir:102189
protein:vir:101507
Barnyard
PBI1
PLot
52 %
34 %
34 %
Ne1 protein:vir:7449
protein:vir:102190
protein:vir:101508
Barnyard
PBI1
PLot
51 %
45 %
43 %
Tc1 protein:vir:7450
protein:vir:102191
protein:vir:101509
Barnyard
PBI1
PLot
38 %
36 %
36 %