Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 17 lcl|Aclame:protein:vir:101504|NCBI_annot:gp17|genbank:acc:YP_655396;genbank:gi:109522584;genbank:Gen HHsearch (proba=96.91%)
Portal 9 lcl|Aclame:protein:vir:101494|NCBI_annot:gp9|genbank:acc:YP_655388;genbank:gi:109522576;genbank:Gene HHsearch (proba=100.00%)
TermL 8 lcl|Aclame:protein:vir:101493|NCBI_annot:gp8|genbank:acc:YP_655387;genbank:gi:109522575;genbank:Gene Blast (e-value=0)
MTP 25 lcl|Aclame:protein:vir:101512|NCBI_annot:gp25|genbank:acc:YP_655404;genbank:gi:109522592;genbank:Gen Blast (e-value=1e-164)
Sheath NOT FOUND
Ad1 19 lcl|Aclame:protein:vir:101506|NCBI_annot:gp19|genbank:acc:YP_655398;genbank:gi:109522586;genbank:Gen HHsearch (proba=100.00%)
Hc1 20 lcl|Aclame:protein:vir:101507|NCBI_annot:gp20|genbank:acc:YP_655399;genbank:gi:109522587;genbank:Gen HHsearch (proba=100.00%)
Ne1 21 lcl|Aclame:protein:vir:101508|NCBI_annot:gp21|genbank:acc:YP_655400;genbank:gi:109522588;genbank:Gen HHsearch (proba=100.00%)
Tc1 22 lcl|Aclame:protein:vir:101509|NCBI_annot:gp22|genbank:acc:YP_655401;genbank:gi:109522589;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:101607
protein:vir:8102
protein:vir:100632
11b
Che9c
77
9 %
12 %
11 %
Portal protein:vir:101494
protein:vir:102239
protein:vir:7430
PLot
PBI1
Barnyard
100 %
99 %
35 %
TermL protein:vir:102238
protein:vir:101493
protein:vir:7429
PBI1
PLot
Barnyard
100 %
100 %
45 %
MTP protein:vir:102193
protein:vir:101512
protein:vir:7453
PBI1
PLot
Barnyard
100 %
100 %
52 %
Ad1 protein:vir:102188
protein:vir:101506
protein:vir:7446
PBI1
PLot
Barnyard
100 %
100 %
35 %
Hc1 protein:vir:102189
protein:vir:101507
protein:vir:7447
PBI1
PLot
Barnyard
100 %
100 %
36 %
Ne1 protein:vir:101508
protein:vir:102190
protein:vir:7449
PLot
PBI1
Barnyard
100 %
100 %
43 %
Tc1 protein:vir:101509
protein:vir:102191
protein:vir:7450
PLot
PBI1
Barnyard
100 %
99 %
35 %