Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 16 lcl|NC_011022.1_cdsid_YP_001994747.1 HHsearch (proba=100.00%)
Portal 13 lcl|NC_011022.1_cdsid_YP_001994744.1 HHsearch (proba=100.00%)
TermL 12 lcl|NC_011022.1_cdsid_YP_001994743.1 Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 18 lcl|NC_011022.1_cdsid_YP_001994749.1 HHsearch (proba=100.00%)
Hc1 19 lcl|NC_011022.1_cdsid_YP_001994750.1 HHsearch (proba=100.00%)
Ne1 20 lcl|NC_011022.1_cdsid_YP_001994751.1 HHsearch (proba=100.00%)
Tc1 21 lcl|NC_011022.1_cdsid_YP_001994752.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:78223
protein:vir:78523
protein:vir:2344
Bethlehem
U2
Bxb1
96 %
89 %
27 %
Portal protein:vir:78537
protein:vir:78227
protein:vir:7768
U2
Bethlehem
Bxz2
99 %
99 %
44 %
TermL protein:vir:78494
protein:vir:78228
protein:vir:2340
U2
Bethlehem
Bxb1
98 %
94 %
82 %
Ad1 protein:vir:78478
protein:vir:78254
protein:vir:7773
U2
Bethlehem
Bxz2
100 %
100 %
44 %
Hc1 protein:vir:78288
protein:vir:78529
protein:vir:2346
Bethlehem
U2
Bxb1
97 %
95 %
89 %
Ne1 protein:vir:78503
protein:vir:78298
protein:vir:2347
U2
Bethlehem
Bxb1
100 %
100 %
100 %
Tc1 protein:vir:78481
protein:vir:78292
protein:vir:2348
U2
Bethlehem
Bxb1
99 %
99 %
99 %