Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 17 lcl|NC_010495.1_cdsid_YP_001742054.1 HHsearch (proba=100.00%)
Portal 4 lcl|NC_010495.1_cdsid_YP_001742041.1 HHsearch (proba=100.00%)
TermL 2 lcl|NC_010495.1_cdsid_YP_001742039.1 Blast (e-value=2e-63)
MTP 29 lcl|NC_010495.1_cdsid_YP_001742066.1 Blast (e-value=7e-13)
Sheath NOT FOUND
Ad1 24 lcl|NC_010495.1_cdsid_YP_001742061.1 HHsearch (proba=100.00%)
Hc1 25 lcl|NC_010495.1_cdsid_YP_001742062.1 HHsearch (proba=100.00%)
Ne1 26 lcl|NC_010495.1_cdsid_YP_001742063.1 HHsearch (proba=100.00%)
Tc1 27 lcl|NC_010495.1_cdsid_YP_001742064.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:105778
protein:vir:80068
protein:vir:5255
ES18
B054
Aaphi23
32 %
12 %
14 %
Portal protein:vir:105782
protein:vir:80040
protein:vir:79647
ES18
B054
TLS
31 %
17 %
15 %
TermL protein:vir:96782
protein:vir:105705
protein:vir:106641
phiHSIC
ES18
187
35 %
35 %
25 %
MTP protein:vir:105771
protein:vir:196
protein:vir:93600
ES18
HK97
phi 4795
28 %
19 %
19 %
Ad1 protein:vir:105776ES1829 %
Hc1 protein:vir:105774ES1837 %
Ne1 protein:vir:105773
protein:vir:102441
protein:vir:106570
ES18
Pipefish
Lj965
33 %
23 %
21 %
Tc1 protein:vir:105772
protein:vir:9648
protein:vir:98629
ES18
315.1
phi3396
20 %
12 %
12 %