Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : A006 | Genbank acc : NC_009815 | Aclame index mge :1859

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 61

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	6	lcl\|Aclame:protein:vir:78920\|NCBI_annot:Cps\|genbank:acc:YP_001468846;genbank:gi:157325479;genbank:Ge	HHsearch (proba=100.00%)
Portal	3	lcl\|Aclame:protein:vir:78907\|NCBI_annot:gp3\|genbank:acc:YP_001468843;genbank:gi:157325445;genbank:Ge	HHsearch (proba=100.00%)
TermL	2	lcl\|Aclame:protein:vir:78869\|NCBI_annot:TerL\|genbank:acc:YP_001468842;genbank:gi:157325434;genbank:G	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	8	lcl\|Aclame:protein:vir:78916\|NCBI_annot:gp8\|genbank:acc:YP_001468848;genbank:gi:157325483;genbank:Ge	HHsearch (proba=100.00%)
Hc1	9	lcl\|Aclame:protein:vir:78914\|NCBI_annot:gp9\|genbank:acc:YP_001468849;genbank:gi:157325484;genbank:Ge	HHsearch (proba=100.00%)
Ne1	10	lcl\|Aclame:protein:vir:78894\|NCBI_annot:gp10\|genbank:acc:YP_001468850;genbank:gi:157325424;genbank:G	HHsearch (proba=100.00%)
Tc1	11	lcl\|Aclame:protein:vir:78876\|NCBI_annot:gp11\|genbank:acc:YP_001468851;genbank:gi:157325425;genbank:G	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78920 protein:vir:99523 protein:vir:102335	A006 Lj928 phi CD119	100 % 46 % 27 %
Portal	protein:vir:78907 protein:vir:97336 protein:vir:94805	A006 52A 29	100 % 17 % 17 %
TermL	protein:vir:78869 protein:vir:9814 protein:vir:3027	A006 315.4 PhiNIH1.1	100 % 59 % 58 %
Ad1	protein:vir:78916 protein:vir:98900 protein:vir:43	A006 BCJA1c A118	100 % 24 % 24 %
Hc1	protein:vir:78914 protein:vir:44 protein:vir:80934	A006 A118 A500	100 % 19 % 17 %
Ne1	protein:vir:78894 protein:vir:4790 protein:vir:9823	A006 MM1 315.4	100 % 22 % 20 %
Tc1	protein:vir:78876	A006	100 %