Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 2 lcl|Aclame:protein:vir:79171|NCBI_annot:gp2, HHsearch (proba=100.00%)
Portal 5 lcl|Aclame:protein:vir:79207|NCBI_annot:gp5, HHsearch (proba=100.00%)
TermL 4 lcl|Aclame:protein:vir:79177|NCBI_annot:gp4, Blast (e-value=0)
MTP 29 lcl|Aclame:protein:vir:79203|NCBI_annot:gp29, Blast (e-value=2e-98)
Sheath 30 lcl|Aclame:protein:vir:79181|NCBI_annot:gp30, HHsearch (proba=100.00%)
Ad1 48 lcl|Aclame:protein:vir:79188|NCBI_annot:gp48, HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 39 lcl|Aclame:protein:vir:79179|NCBI_annot:gp39, HHsearch (proba=100.00%)
Tc1 40 lcl|Aclame:protein:vir:79169|NCBI_annot:gp40, HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Tc1<->Ad1 8 4
Ne1<->Ad1 9 4


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:79171
protein:vir:1153
protein:vir:79157
phiE202
phi CTX
RSA1
100 %
65 %
63 %
Portal protein:vir:79207
protein:vir:79150
protein:vir:98567
phiE202
RSA1
PSP3
100 %
62 %
56 %
TermL protein:vir:79177
protein:vir:1151
protein:vir:79128
phiE202
phi CTX
RSA1
100 %
64 %
64 %
MTP protein:vir:79203
protein:vir:79133
protein:vir:1173
phiE202
RSA1
phi CTX
100 %
53 %
53 %
Sheath protein:vir:79181
protein:vir:79141
protein:vir:1172
phiE202
RSA1
phi CTX
100 %
65 %
65 %
Ad1 protein:vir:79188
protein:vir:79124
protein:vir:1155
phiE202
RSA1
phi CTX
100 %
55 %
46 %
Ne1 protein:vir:79179
protein:vir:1164
protein:vir:79115
phiE202
phi CTX
RSA1
100 %
47 %
43 %
Tc1 protein:vir:79169
protein:vir:79131
protein:vir:1163
phiE202
RSA1
phi CTX
100 %
43 %
39 %