Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 37 lcl|Aclame:protein:vir:94622|NCBI_annot:PfWMP4_37|genbank:acc:YP_762667;genbank:gi:115304375;genbank HHsearch (proba=100.00%)
Portal 39 lcl|Aclame:protein:vir:94599|NCBI_annot:PfWMP4_39|genbank:acc:YP_762669;genbank:gi:115304377;genbank HHsearch (proba=100.00%)
TermL 40 lcl|Aclame:protein:vir:94598|NCBI_annot:PfWMP4_40|genbank:acc:YP_762670;genbank:gi:115304378;genbank Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 36 lcl|Aclame:protein:vir:94601|NCBI_annot:PfWMP4_36|genbank:acc:YP_762666;genbank:gi:115304374;genbank HHsearch (proba=100.00%)
Hc3 35 lcl|Aclame:protein:vir:94602|NCBI_annot:PfWMP4_35|genbank:acc:YP_762665;genbank:gi:115304373;genbank HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:94622
protein:vir:80180
protein:vir:1541
Pf-WMP4
Pf-WMP3
phiYeO3-12
100 %
38 %
19 %
Portal protein:vir:94599
protein:vir:80165
protein:vir:8883
Pf-WMP4
Pf-WMP3
gh-1
100 %
31 %
17 %
TermL protein:vir:94598
protein:vir:80169
protein:vir:2600
Pf-WMP4
Pf-WMP3
SIO1
100 %
32 %
23 %
Ad3 protein:vir:94601
protein:vir:80185
protein:vir:100027
Pf-WMP4
Pf-WMP3
P-SSP7
100 %
31 %
16 %
Hc3 protein:vir:94602
protein:vir:80177
protein:vir:3133
Pf-WMP4
Pf-WMP3
VpV262
100 %
30 %
18 %