Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 5 lcl|Aclame:protein:vir:93881|NCBI_annot:ORF011|genbank:acc:YP_239938;genbank:gi:66395599;genbank:Gen HHsearch (proba=100.00%)
Portal 3 lcl|Aclame:protein:vir:93943|NCBI_annot:ORF010|genbank:acc:YP_239936;genbank:gi:66395598;genbank:Gen HHsearch (proba=100.00%)
TermL 2 lcl|Aclame:protein:vir:93883|NCBI_annot:ORF005|genbank:acc:YP_239935;genbank:gi:66395593;genbank:Gen Blast (e-value=0)
MTP 11 lcl|Aclame:protein:vir:93909|NCBI_annot:ORF017|genbank:acc:YP_239944;genbank:gi:66395605;genbank:Gen Blast (e-value=1e-124)
Sheath NOT FOUND
Ad1 6 lcl|Aclame:protein:vir:93879|NCBI_annot:ORF046|genbank:acc:YP_239939;genbank:gi:66395631;genbank:Gen HHsearch (proba=99.96%)
Hc1 8 lcl|Aclame:protein:vir:93906|NCBI_annot:ORF036|genbank:acc:YP_239941;genbank:gi:66395624;genbank:Gen HHsearch (proba=100.00%)
Ne1 9 lcl|Aclame:protein:vir:93898|NCBI_annot:ORF028|genbank:acc:YP_239942;genbank:gi:66395616;genbank:Gen HHsearch (proba=100.00%)
Tc1 10 lcl|Aclame:protein:vir:93902|NCBI_annot:ORF029|genbank:acc:YP_239943;genbank:gi:66395617;genbank:Gen HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:93881
protein:vir:96978
protein:vir:94424
3A
42e
47
100 %
98 %
98 %
Portal protein:vir:94426
protein:vir:93943
protein:vir:2683
47
3A
phiSLT
100 %
100 %
100 %
TermL protein:vir:78630
protein:vir:94427
protein:vir:93883
tp310-2
47
3A
100 %
100 %
100 %
MTP protein:vir:93909
protein:vir:78634
protein:vir:96971
3A
tp310-2
42e
100 %
98 %
98 %
Ad1 protein:vir:93879
protein:vir:78636
protein:vir:96976
3A
tp310-2
42e
100 %
99 %
99 %
Hc1 protein:vir:93906
protein:vir:2687
protein:vir:78645
3A
phiSLT
tp310-2
100 %
100 %
95 %
Ne1 protein:vir:93898
protein:vir:2688
protein:vir:78644
3A
phiSLT
tp310-2
100 %
99 %
97 %
Tc1 protein:vir:93902
protein:vir:94418
protein:vir:78648
3A
47
tp310-2
100 %
98 %
97 %