Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 23 lcl|Aclame:protein:vir:3746|NCBI_annot:orf15|genbank:acc:NP_043487;genbank:gi:9628622;genbank:GeneID HHsearch (proba=100.00%)
Portal 20 lcl|Aclame:protein:vir:3743|NCBI_annot:orf15|genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID HHsearch (proba=100.00%)
TermL 21 lcl|Aclame:protein:vir:3744|NCBI_annot:orf15|genbank:acc:NP_043485;genbank:gi:9628620;genbank:GeneID Blast (e-value=0)
MTP NOT FOUND
Sheath 28 lcl|Aclame:protein:vir:3751|NCBI_annot:orf23|genbank:acc:NP_043492;genbank:gi:9628627;genbank:GeneID HHsearch (proba=100.00%)
Ad1 25 lcl|Aclame:protein:vir:3748|NCBI_annot:orf15|genbank:acc:NP_043489;genbank:gi:9628624;genbank:GeneID HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 27 lcl|Aclame:protein:vir:3750|NCBI_annot:hypothetical HHsearch (proba=100.00%)
Tc1 26 lcl|Aclame:protein:vir:3749|NCBI_annot:orf15|genbank:acc:NP_043490;genbank:gi:9628625;genbank:GeneID HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:3746
protein:vir:3783
protein:vir:98856
HP1
HP2
F108
100 %
96 %
42 %
Portal protein:vir:3743
protein:vir:3780
protein:vir:98853
HP1
HP2
F108
100 %
98 %
80 %
TermL protein:vir:3744
protein:vir:3781
protein:vir:98854
HP1
HP2
F108
100 %
96 %
79 %
Sheath protein:vir:3751
protein:vir:3788
protein:vir:98861
HP1
HP2
F108
100 %
99 %
72 %
Ad1 protein:vir:3748
protein:vir:3785
protein:vir:98858
HP1
HP2
F108
100 %
91 %
67 %
Ne1 protein:vir:3750
protein:vir:98860
protein:vir:3787
HP1
F108
HP2
100 %
50 %
41 %
Tc1 protein:vir:3749
protein:vir:3786
protein:vir:98859
HP1
HP2
F108
100 %
63 %
58 %