Once you have registered your Raw & MzDB Files and associated Raw Files to you Search Results, you are ready to create a Quantitation.

Double-click on the “Quantitations” node of your project tree to show you Quantitations table panel. It's empty if you haven't created any quantitation in this project yet. Click on the “New Quantitation” button to open the Quantitation Creation Panel.

Note that you can also open it by right-clicking on the Quantitation node or on the Project node itself.

The first tab of the Quantitation creation panel let you define a name, a description (optional), choose a type and a method.

TODO : details

Once you've made your choices, click on “Next”.

The Experimental design tab is where you define your Groups and Samples. By default, two groups are created and each one contains a sample.

You can create new groups by clicking on the “Add Group” button in the top bar of the tab. In each group, you can manage your sample by using the buttons in the left grid.

To add a Search Result to one of the samples of the group, select it in the left grid, and drag and drop a validated result set from your project's tree to the “Sample Analyses” grid

Once you have prepared all your group and samples, click on the “Next” button.

This tab let you set up you abundance extraction parameters.

TODO : Details

The purpose of this tab is to define the ratios between the groups your quantitation will rely on