Current documentation corresponds to Proline Release 1.1

Note: Read the Concepts & Principles documentation to understand main concepts and algorithms used in Proline.

• Create a Proline User
• Create a Proline Project

• Open a session and access to my projects
• Create a new project
• Create a Dataset
• Import a Search Result
• Delete Data and clean project
• Connection Management

• Display MSQueries, Peptides/PSM or Proteins of a Search Result
• Display MSQueries, PSM, Peptides, Protein Sets, PTM Protein Sites or Adjacency Matrices of an Identification Summary
• Display Search Result & Identification Summary Properties
• Display Spectral Counts
• Display XIC
• Create and Save a User Window
• List of Abbreviations
• Frame Toolbars Functionalities
• Filter tables
• Search tables
• Graphics : Scatter Plot / Histogram
• Statistical Reports (MSDiag)
• MzDB Files (MzScope)

• Import Mascot/OMSSA/X!Tandem result file
• Export data
• Generate Spectrum Matches

• Validate a Search Result
• Filter Protein Sets
• Change Typical Protein of a Protein Set
• Merge
• Data Analyzer
• Calculator
• Update Spectrum using Peaklist software

• Spectral Count
• XIC
• Refine Protein Sets Abundances

• Preferences Dialog

• Open a session and access to my projects
• Register and pair Raw & MzDB files
• Create a new project
• Import Result Files
• Create an Identification Dataset
• Validate a Search Result
• Create a Quantitation
• Delete Datasets

• Create a User

• Display Identification Summary information
• Display proteins sets in Identification Summary
• Display peptides and/or PSM in identification result

• Display Quantition results

• Export data
• Import Result Files

• Validate a Search Result