This shows you the differences between two versions of the page.
Next revision | Previous revision | ||
setupguide:upgrade2v1_2 [2016/02/04 16:15] 132.168.72.225 créée |
setupguide:upgrade2v1_2 [2016/07/07 14:01] (current) 132.168.72.225 |
||
---|---|---|---|
Line 1: | Line 1: | ||
====== Upgrading the Proline Suite ====== | ====== Upgrading the Proline Suite ====== | ||
- | __**From Version 1_1 to Version 1_2**:__ | + | __**From Version 1.1 to Version 1.2 and from Version 1.2 to Version 1.3**:__ |
===== Updating the Datastore ===== | ===== Updating the Datastore ===== | ||
Line 11: | Line 11: | ||
==== from Windows installer ==== | ==== from Windows installer ==== | ||
- | You will first need to uninstall previous server. This will not remove previous data stored in Proline DataStore nor it will remove configuration files ! | + | You will first need to uninstall previous server. This will not remove previous data stored in Proline DataStore nor will it remove configuration files! |
+ | |||
+ | You then have to do a fresh install using the same folder as previous installation. (see [[setupguide:firstinstallserverinstaller]]) | ||
+ | |||
+ | |||
+ | ==== Using archive files ==== | ||
+ | |||
+ | Extract Proline WebCore zip file (packaged into ProlineServer archive) to the location of your choice, use a different location than previous installation. | ||
+ | |||
+ | |||
+ | __Configuration files__ \\ | ||
+ | |||
+ | Before running the server, you first need to modify ProlineWeb-Core configuration. Configuration files are located at ''<your_folder>\ProlineWeb-Core-x.y.z\Proline\WEB-INF\classes''. | ||
+ | |||
+ | The configuration files didn't change. You can just copy theses files from your previous ProlineWeb-Core to the new one. | ||
+ | |||
+ | To use the XIC Quantitation process, you should also configure the mzDB files **''mount_points''** entry. See first installation documentation for more details. | ||
+ | |||
+ | |||
+ | |||
+ | __Runner__ \\ | ||
+ | You can upgrade the amount of memory used by the server in the jetty-runner.bat /jetty-runner.sh file. If the server is configured with large amount of memory, it is recommended to increase this value. | ||
+ | Change the value of -Xmx option: Xmx4g ⇒ -Xmx8g to upgrade from 4 GB (defaults) to 8GB. | ||
+ | |||
+ | |||
+ | Run ''jetty-runner.bat'' (or jetty-runner.sh on linux system) to start the jetty server. You should now be able to access ProlineWeb-Core by typing [[http://localhost:8080/proline]] or [[http://<hostname>:8080/proline]] in your favorite browser. The following message must appear: | ||
+ | |||
+ | <code> | ||
+ | ProlineWeb-Core working ! | ||
+ | |||
+ | Number of IVersion services : <X> | ||
+ | fr.proline.core.wsl.Version Module: ProlineWeb-Core Version: <XXX> | ||
+ | fr.proline.module.parser.omssa.Version Module: PM-OmssaParser Version: <YYY> | ||
+ | fr.proline.module.parser.mascot.Version Module: PM-MascotParser Version:<XYZ> | ||
+ | fr.proline.admin.Version Module: Proline-Admin Version: <ZYW> | ||
+ | fr.proline.util.ScalaVersion Module: ProFI-Commons-Scala Version: <YZX> | ||
+ | fr.proline.util.JavaVersion Module: ProFI-Commons-Java Version: <YXZ> | ||
+ | fr.proline.core.service.Version Module: Proline-OMP Version: <WYZ> | ||
+ | </code> | ||
- | EN COURS | ||
===== Updating Sequence Repository ===== | ===== Updating Sequence Repository ===== | ||
- | There is no upgrade procedure for this module. You should do a fresh install, see [[setupguide:seqrepoinstall|installing Sequence Repository]]. As configuration files structure has changed, you CAN NOT copy/paste them to this new installation. Nevertheless, you can copy the previous rules in the appropriate properties of the new files. | + | There is no upgrade procedure for this module. You should do a fresh install, see [[setupguide:seqrepoinstall|installing Sequence Repository]]. |
+ | |||
+ | __From Version 1.1 to 1.2__: As configuration files structure has changed, you CAN NOT copy/paste them to this new installation. Nevertheless, you can copy the previous rules in the appropriate properties of the new files. | ||
+ | __From Version 1.2 to 1.3__: Configuration files have not been modified. You CAN copy/paste them to this new installation from previous version (1.2 !) . | ||
===== Upgrading Proline Studio ===== | ===== Upgrading Proline Studio ===== |