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--- setupguide:setup_with_prolineadmin_gui [2016/06/13 10:40]
193.48.0.3
+++ setupguide:setup_with_prolineadmin_gui [2016/07/07 14:09] (current)
132.168.72.225 [Set up the Datastore]
@@ Line 37: / Line 37: @@
 To edit Proline configuration file(s), select the last tab of the configuration window, entitled //Proline configuration//.
-//
+{{ :setupguide:proline_configuration.png?nolink&800 |}}
-TODO: update doc from here
-{{ :setupguide:edit_proline_conf_no_mount_points.png?nolink&1000|}}
+This tab is split in three parts:
+  * __Working files__ (not visible on the screenshot above): reminds you of the selected configuration files. You can also select other files from here ; it will be effective after clicking on the //Apply// button of this block. It is fully synchronized with the first tab (//Configuration files//) of the configuration window.
-** Do not confuse: **
+  * __Database connection:__ configure and test the connection to the proline database. Entries will be saved in Proline Admin configuration file and in Proline Server configuration file if provided.
-  * 'Data directory' under 'Proline': indicates where to store Proline data (e.g. exports).
+  * __Mount points:__ define the Proline mount points in three categories (more details in the following paragraph). Entries will be saved in Proline Server and PWX configuration files if provided.
-  * 'PostgreSQL data directory' (Menu -> Select PostgreSQL data directory): references the PostgreSQL data directory (PostgreSQL configuration files). This one is needed to configure your PostgreSQL instance through ProlineAdmin-GUI (see [[setupguide:postgresqloptimization|PostgreSQL optimization]]).
 === Configure the mount-points ===
-Note that the section named 'Mount points' should now be enable only if Proline server configuration file has been located.
+Note that the section named //Mount points// is enable only if the Proline server configuration file has been located (see screenshot above).
-Administrator must configure the target directory/ies in 'Mount points' section of the dialog 'Edit Proline configuration'.
-{{ :setupguide:edit_mount_points.png?nolink&1000|}}
+Input files (e.g. *.RAW, *.WIFF, *.D) should be set in the 'Raw files' sub-section.\\
+mzDB files should be set in the 'mzDB_files' sub-section.\\
-\\
+Identification result files (e.g. Mascot .dat, OMSSA .omx) should be set in the 'Result files' sub-section.
-Result identification files (Mascot dat,  OMSSA or X!Tandem) as well as mzDB files (for the XIC Quantitation process) are only browsed from Proline Server side.
+Several alias/full_path pairs can be used or each.
+Aliases can be any valid string chosen by the administrator to help the users identify a mount_point. If multiple repositories are defined, aliases must be different.
 !! Important: on a Windows server installation, please use UNC style to access remote disks instead of mounted disk on letters. Otherwise Proline won't be fully functional.
@@ Line 61: / Line 59: @@
 instead of a mounted disk on Z: (Z: mounted as \\my_server\\disk\\folder)
-Input files should be set in the 'RAW files' sub-section;
+Result identification files (Mascot dat,  OMSSA or X!Tandem) as well as mzDB files (for the XIC Quantitation process) are only browsed from Proline Server side.
-Mascot dat or OMSSA path should be configured in the 'Result files' sub-section;
-mzDB files path should be set in the 'mzDB_files' sub-section.
-Several alias/full_path pairs can be used or each.
-Aliases can be any valid string chosen by the administrator to help the users identify a mount_point. If multiple repositories are defined, aliases must be different.
+Click //OK// to save changes and go back on the main page, or //Apply// to save changes and stay on the configuration window (edit files).\\
+----
 ==== Set up the Datastore ====
-Once parameters specified in previous Windows, you can finish the Datastore setup by clicking the newly available button "Set up Proline".
+Once the configuration files has been edited and validated, the button //Set up Proline datastore// becomes availale in the main page. Click it to finish the Datastore setup.
 __Note__: This functionality will be disabled if Proline is already set up or if Proline configuration is invalid.
-{{ :setupguide:setup_proline2.png?nolink&1000|}}
+{{ :setupguide:setup_proline_datastore.png?nolink&1000 |}}
 \\
 \\

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