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--- setupguide:firstinstall [2015/07/10 14:43]
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+++ setupguide:firstinstall [2016/07/07 10:07] (current)
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@@ Line 1: / Line 1: @@
-====== Installing the Proline Suite ======
+====== OBSOLETE Installing the Proline Suite ======
+**This page is an obsolete help file. Please see following description :  ** [[setupguide:start#installing_upgrading_the_proline_suite|Install and set up Proline]]
 The Proline suite is based on ([[setupguide:start#architecture_overview|different components]]).
 The following documentation describes the installation procedure for each of this component:
-  * [[#proline_server_installation_and_setup|Proline server]]
+  * [[#installing_and_configuring_proline_server|Proline server]]
   * [[#installing_and_configuring_the_sequence_repository|Sequence Repository]]
   * [[#installing_proline_studio|Proline Studio]]
   * [[#installing_and_configuring_proline_web_desktop|Proline Web]]
-====== Proline server installation and setup ======
+====== Installing and configuring Proline server ======
-==== Proline server installation ====
+===== Proline server installation =====
 === Windows users ===
-Download the automated installer from the Proline website (http://proline.profiproteomics.fr/download/).
+Download the automated installer from the Proline website (http://proline.profiproteomics.fr/download/). \\
+**Warning: Be sure to run the executable file as "administrator" to be able to install third-party dependencies such as PostgreSQL**.
 The wizard will guide you through the installation process. \\
 By default, the installer will unpack all components on the computer. However, it is possible to install the Proline components on distinct computers if it fits better your hardware architecture.
-For users who prefer **manual installation or without administrator rights**, an archive file of the distribution is also available. You can follow the installation procedure described in the next section.
+For users who prefer **manual installation or without administrator privileges**, an archive file of the distribution is also available. You can follow the installation procedure described in the next section.
@@ Line 41: / Line 47: @@
 We will guide you through this process, step by step, using both these tools.
-===== Setting up the Datastore =====
+===== Setting up the Datastore and Proline Server =====
-You must first configure ProlineAdmin since this component is used to create the databases needed by Proline.
+You can either use the graphical interface ProlineAdmin GUI => [[setupguide:setup_with_prolineadmin_gui#setup with prolineadmin gui| How to ]] \\
+or use the command-line tool ProlineAdmin  => [[setupguide:setup_with_prolineadmin#setup_with_prolineadmin| How to ]] .
-==== From graphical tool ProlineAdmin GUI ====
-=== Launch ProlineAdmin GUI ===
-== Windows users ==
-A shortcut "Proline Admin" is available in the Windows Start Menu, under the Proline folder.
-== Linux users or manual installation  ==
-Execute the ''start.sh'' script located in the folder obtained after Proline Admin GUI archive file extraction.
-=== ProlineAdmin GUI usage ===
-The default configuration file ''config/application.conf'' is loaded. You can alternatively edit this file (see [[#configuring_prolineadmin|"Configuring ProlineAdmin"]] section below) or select another ''.conf'' file of the same format.
-To edit default file, press the "Edit Proline configuration" button. You can now edit your file in the newly opened window, and save it.
-{{ :setupguide:edit_config_bg.png?nolink&600 |}}
-To load a ''.conf'' file, use the menu on the top left and select your file in the file browser.
-{{ :setupguide:select_config_file.png?nolink&600 |}}
-Finish the datastore setup by clicking the newly available button "Set up Proline".
-__Note__: This functionality will be disabled if Proline is already set up or if Proline configuration is invalid.
-{{ :setupguide:set_up_proline.png?nolink&600 |}}
-==== Using the command line interface (ProlineAdmin) ====
-Edit the configuration file ''config/application.conf'' located in the ProlineAdmin folder (see [[#configuring_prolineadmin|"Configuring ProlineAdmin"]] section below).
-Then perform the datastore setup by running the dedicated script.
-== Windows users ==
-The ProlineAdmin program files are located in the ".\admin" sub-folder of the Proline installation directory.
-You should find the following script in this folder:
-<code>
-> setup_proline.bat
-</code>
-== Linux users or manual installation  ==
-Execute the ''setup_proline.sh'' script located in the folder obtained after Proline Admin GUI archive file extraction.
-==== Configuring ProlineAdmin ====
-Modify the following lines to fit your DBMS configuration:
-<code>
-proline-config {
-  driver-type = "postgresql" // valid values are: h2, postgresql or sqlite
-  data-directory = "/Path/to/Proline/Data"  //Not used actually...
-}
-auth-config {
-  user="proline_user"  //!! SET TO Database Proline user login
-  password="proline_user_password" //!! SET TO Database Proline user password
-}
-host-config {
-  host="your_postgresql_server_host"  //!! Do NOT put "localhost", but the real IP address or fully qualified name
-  port="5432" //or other port used to access your DBMS
-}
-</code>
-__Note__: default naming scheme of databases created by Proline can be modified by editing ''config/application-<dbtype>.conf'' file.
-===== Configuring the Proline Server =====
-==== Locating the server folder ====
-=== Windows users ===
-The server program files are located in the ".\ws" sub-folder of the Proline installation directory.
-=== Linux users or manual installation ===
-Open the folder where you have unzipped the "Proline Server" archive. The Proline server folder should contain a sub-folder named ''ProlineWeb-Core-<x.y.z>''.
-=== Editing the configuration file===
-The configuration file is located at ''<proline_server_folder>\ProlineWeb-Core-<x.y.z>\Proline\WEB-INF\classes''. \\
-== Configuring the datastore ==
-Edit the ''application.conf'' file in the same way you did it for ProlineAdmin (see [[#Setting up the Datastore]]).
-If your configuration is valid, the Proline Server will be able to use the datastore you've created using Proline Admin.
-== Configuring the mount-points ==
-Result identification files (Mascot dat,  OMSSA or X!Tandem) as well as mzDB files (for the XIC Quantitation process)  are only browsed from Proline Server side.
-Administrator must configure the target directory/ies in the entry ''mount_points'' in the ''application.conf'' file
-Mascot dat or OMSSA path should be configured in ''result_files'' sub-entry, administrator can add one or more mappings as ''label = "<absolute/directory/path>"''.
-mzDB files path should be set under ''mzdb_files'' sub-entry.
-Label can be any valid string chosen by Administrator to help user identify mount_point. If multiple repositories are defined, labels must be different.
-Configuration examples:
-<code>
-mount_points {
-  result_files {
-    mascot_data = "Z:/"  //under window environement
-    omssa_data = "/local/omssa/data" //under linux environement
-    xtandem_data = "U:/"
-    ...
-  }
-  ...
-  mzdb_files {
-  }
-}
-</code>
 ===== Running the server =====
@@ Line 266: / Line 153: @@
     * [[prolineconcepts:PWD| Install, Configure and launch the Desktop]]

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