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prolineconcepts:rs_rsm [2013/04/16 09:47]
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-====== Search Result and Identification Summary ====== 
  
-A **Raw Search** (aka [[:​msidb_documentation#​result_set|ResultSet]] in the database schema) is the raw interpretation of a given set of MS/MS spectra given by a search engine or a denovo interpretation process. The content of a **Search Result** is  one or many peptides matching to the submitted MSMS spectrum (**PSM**), each peptide being issued from protein sequences. The Search Result also contains additional information such as search parameters, used data-bank, etc. A **Search Result** is created when a Mascot ''​.dat''​ file or an OMSSA ''​.omx''​ file is imported in Proline, in the case of a target-decoy search, two **Search Results** are created : one for the target PSM, one for decoy PSM.  
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-An **Identification Summary** (aka [[:​msidb_documentation#​result_summary|ResultSummary]]) is a set of identified proteins inferred from a subset of the PSM contained in the *Search Result*. The subset of PSM taken into account are the PSM that have been validated a filtering process (example: PSM fulfilling some specified criteria such as score greater than a threshold value). ​ 
prolineconcepts/rs_rsm.1366098472.txt.gz · Last modified: 2013/04/16 09:47 by 132.168.72.53