prolineconcepts:rs
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
prolineconcepts:rs [2016/07/07 14:18] 132.168.72.225 [X! Tandem result importation] |
prolineconcepts:rs [2016/07/07 14:19] (current) 132.168.72.225 [X! Tandem result importation] |
||
|---|---|---|---|
| Line 3: | Line 3: | ||
| A **Search Result** (aka [[:msidb_documentation#result_set|ResultSet]] in the database schema) is the raw interpretation of a given set of MS/MS spectra given by a search engine or a //de novo// interpretation process. It contains one or many peptides matching the submitted MS/MS spectra (**PSM**, i.e. Peptide Spectrum Match), and the protein sequences these peptides belong to. The Search Result also contains additional information such as search parameters, used protein sequence data-bank, etc. | A **Search Result** (aka [[:msidb_documentation#result_set|ResultSet]] in the database schema) is the raw interpretation of a given set of MS/MS spectra given by a search engine or a //de novo// interpretation process. It contains one or many peptides matching the submitted MS/MS spectra (**PSM**, i.e. Peptide Spectrum Match), and the protein sequences these peptides belong to. The Search Result also contains additional information such as search parameters, used protein sequence data-bank, etc. | ||
| - | A **Search Result** is created when a [[prolineconcepts:resultfile|]] (Mascot ''.dat'' file, OMSSA ''.omx'' or a X! Tandem ''.xml'') file is imported in Proline. In the case of a target-decoy search, two **Search Results** are created: one for the target PSMs, one for decoy PSMs. | + | A **Search Result** is created when a [[prolineconcepts:resultfile|]] (Mascot ''.dat'' file, OMSSA ''.omx'' or an X! Tandem ''.xml'') file is imported in Proline. In the case of a target-decoy search, two **Search Results** are created: one for the target PSMs, one for decoy PSMs. |
| ===== Content of a Search Result ===== | ===== Content of a Search Result ===== | ||
| Line 41: | Line 41: | ||
| ''<group id="581" mh="1840.926000" z="1" rt="25.5" type="model">'' | ''<group id="581" mh="1840.926000" z="1" rt="25.5" type="model">'' | ||
| - | **Note 2:** If all markups and labels, needed for file import (FIXME: list them all) , are not existing in X! Tandem file, it'll generate error during import in ProlineStudio ! The lastest version, Sledgehammer, are supported in actual ProlineStudio (v.1.1) | + | **Note 2:** If all mark-ups and labels, needed for file import (FIXME: list them all) , are not existing in X! Tandem file, it'll generate error during import in ProlineStudio! The latest version, Sledgehammer, are supported in actual ProlineStudio (v.1.1) |
prolineconcepts/rs.1467893930.txt.gz · Last modified: 2016/07/07 14:18 by 132.168.72.225
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
