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--- prolineconcepts:resultfile [2013/09/25 15:57]
132.168.72.53 créée
+++ prolineconcepts:resultfile [2015/07/10 11:14] (current)
132.168.72.225
@@ Line 1: / Line 1: @@
 ====== Result File ======
-a **Result File** is the file created by a search engine when a new search is submitted. OMSSA (.omx files) and Mascot (.dat files) search engine are currently supported by Proline. A first step when using Proline is to import this Result File through [[how_to:studio:importmascot|Proline Studio]] or [[how_to:web:importmascot|Proline Web]].
+A **Result File** is the file created by a search engine when a new search is submitted. OMSSA (''.omx'' files),  Mascot (''.dat'' files) and X! Tandem (''.xml'' files) search engines are currently supported by Proline. A first step when using Proline is to import Result Files through [[how_to:studio:importmascot|Proline Studio]] or [[how_to:web:importresultfiles|Proline Web]].
-FIXME : Specify search type supported (MS/MS ion search, error tolerant search ? N15 ? Peptide Mass Fingerprint ?) for each search engine.
+Search engines provide different types of searches for MS and MS/MS data. It is important to highlight that the Result File content depends on the search type.
+Thus, Mascot searches must be currently performed using MS/MS ions search in order to be properly imported by Proline. Peptide Mass Fingerprint and MS/MS error tolerant searches will be supported in further versions of Proline.
+FIXME: add some details on supported  search types (MS/MS ion search, error tolerant search ? N15 ? Peptide Mass Fingerprint ?) for each search engine.

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