prolineconcepts:decoysearches
Differences
This shows you the differences between two versions of the page.
| Next revision | Previous revision | ||
|
prolineconcepts:decoysearches [2013/09/26 10:15] 132.168.72.53 créée |
prolineconcepts:decoysearches [2016/07/07 14:20] (current) 132.168.72.225 |
||
|---|---|---|---|
| Line 3: | Line 3: | ||
| Proline handles decoy searches performed from two different strategies: | Proline handles decoy searches performed from two different strategies: | ||
| * Concatenated searches: | * Concatenated searches: | ||
| + | * A protein databank is created by concatenating target protein sequence to decoy protein sequence. Decoy could be created using reverse or random strategy. From Mascot or OMSSA point of view, a unique search is done using that databank. | ||
| * Separated searches: | * Separated searches: | ||
| + | * Two searches are done using the same peaklist, one on a target protein databank and one on a decoy protein databank. These searches are then combined to retrieve useful information such as FDR ... Mascot allows user to check a decoy option and will automatically create a decoy databank. | ||
| + | |||
| + | |||
| + | Decoy and Target Search Result | ||
| + | * Concatenated searches: | ||
| + | * When importing search result from a decoy concatenated databank, decoy data are extracted from the Result File and stored in Proline databases as an independent/unique Search Result as well as target Search result data. These both searches are linked to each other. | ||
| + | * Separated searches | ||
| + | * The two performed searches are stored in Proline databases and are linked together. | ||
| + | |||
| + | See [[prolineconcepts:rs|Search Result]] to view which information is saved | ||
prolineconcepts/decoysearches.1380183308.txt.gz · Last modified: 2013/09/26 10:15 by 132.168.72.53
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
