msangelworkflow
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msangelworkflow [2015/10/19 18:47] 193.48.0.3 |
msangelworkflow [2016/03/29 16:17] (current) 132.168.72.225 |
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| === Option C: Import a Mascot Daemon .PAR file (Mascot parameters only) === | === Option C: Import a Mascot Daemon .PAR file (Mascot parameters only) === | ||
| - | Click on //'Import parameters'//. A file browser will open. The default folder for Mascot Daemon .PAR files can be registered in the [[.:msangelInstallAndAdmin#|'//Setup//' menu]].\\ | + | Click on //'Import parameters'//. A file browser will open. The default folder for Mascot Daemon .PAR files can be registered in the [[.:msangelInstallAndAdmin#|'Setup' menu]].\\ |
| The form will auto-fill when a .PAR file is selected. Note that the default template name will be the .PAR file name, and that no owner is attributed to the template. | The form will auto-fill when a .PAR file is selected. Note that the default template name will be the .PAR file name, and that no owner is attributed to the template. | ||
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| In the '//Input data//' part, click on //Add files//. A file browser will open for you to select all your input files. It can be .RAW, .WIFF, or .MGF files. All input files must have the same extension. | In the '//Input data//' part, click on //Add files//. A file browser will open for you to select all your input files. It can be .RAW, .WIFF, or .MGF files. All input files must have the same extension. | ||
| - | The default folder for this file browser can be set in //[[.:msangelInstallAndAdmin#|'//Setup//']] (menu) -> Open setup dialog -> Preferences (first tab) -> File browsing (first section) -> Input files directory (first field)//. | + | The default folder for this file browser can be set in //[[.:msangelInstallAndAdmin#|'Setup']] (menu) -> Open setup dialog -> Preferences (first tab) -> File browsing (first section) -> Input files directory (first field)//. |
| As long as you task is not started, you can modify this list by adding more input files, or select and remove some (//Delete// button). | As long as you task is not started, you can modify this list by adding more input files, or select and remove some (//Delete// button). | ||
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| {{:proline_import_croped.png?500 |}} | {{:proline_import_croped.png?500 |}} | ||
| This feature allows you to import each identification result in Proline, as soon as it is created. | This feature allows you to import each identification result in Proline, as soon as it is created. | ||
| - | The parameters are the same than [[how_to:studio:importmascot|in ProlineStudio]] and [[how_to:web:importmascot|in ProlineWeb]]. | + | The parameters are the same than [[how_to:studio:importmascot|in ProlineStudio]] and [[.:how_to:web:importResultFiles|in Proline Web]]. |
| //Peaklist software//: the software that was used to create the peaklists (i.e. MGF files). If you used MS-Angel for this conversion, this value will be infered. (NB: If you used the option '//Use Proline 1.0 parsing rule//4, then select '//Proline 1.0//' here.) | //Peaklist software//: the software that was used to create the peaklists (i.e. MGF files). If you used MS-Angel for this conversion, this value will be infered. (NB: If you used the option '//Use Proline 1.0 parsing rule//4, then select '//Proline 1.0//' here.) | ||
msangelworkflow.1445273271.txt.gz · Last modified: 2015/10/19 18:47 by 193.48.0.3
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