how_to:web:rsvalidation
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how_to:web:rsvalidation [2015/07/27 09:26] 132.168.72.225 |
how_to:web:rsvalidation [2016/07/06 17:10] (current) 193.48.0.3 |
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| - | To launch a validation on a dataset, click on its node in the Project Tree on the left side of the Dataset Explorer. | + | To launch a validation on a dataset: |
| + | * right-click on its node in the project tree then select //Validate tree// or | ||
| + | * double-click to open identification table, then click //Validate tree// in the toolbar. | ||
| - | {{ :how_to:web:validate_button.png?direct |}} | + | {{ :how_to:web:dse_validate_tree_button.png?nolink&1000 |}} |
| - | + | ||
| - | Click on “Launch Validation” in the toolbar of the Infos tab. | + | |
| - | + | ||
| - | You can also right click on the dataset node and click on use the "Launch Validation" button. | + | |
| The following form appears : | The following form appears : | ||
| - | {{ :how_to:web:validation_form.png?direct |}} | + | {{ :how_to:web:dse_validate_tree_params.png?nolink&800 |}} |
| - | The Validation form handles several settings, especially : | + | The validation form handles several settings, especially : |
| * PSM Filters : use the selection box and the green button to add more filters on Peptide Spectrum Matches to be applied during the validation process : Score, Rank, Sequence Length, E-Value and P-Value. | * PSM Filters : use the selection box and the green button to add more filters on Peptide Spectrum Matches to be applied during the validation process : Score, Rank, Sequence Length, E-Value and P-Value. | ||
| Line 20: | Line 18: | ||
| * PSM Validation Parameters : choose on which param the Peptide FDR should be applied : Score, E-Value or P-Value. | * PSM Validation Parameters : choose on which param the Peptide FDR should be applied : Score, E-Value or P-Value. | ||
| - | * Merging Mode : determines if the merging operation should be done before the validation (result sets) or after the validation process (identification summaries) | + | * Merging Mode : determines if the merging operation should be done before the validation (on result sets) or after the validation process (on identification summaries) |
| - | + | ||
| - | + | ||
| - | When ready, click on “Validate” to launch the validation task. You can see it in the tasks panel. | + | |
| - | + | ||
| + | When ready, click on //Validate// to launch the validation task. You can see it in the tasks panel. | ||
| + | When the validation finishes, a notification will be displayed and the node icon will be colored in green. | ||
| + | See [[prolineconcepts:rsvalidation| more details about the validation process]]. | ||
how_to/web/rsvalidation.1437981963.txt.gz · Last modified: 2015/07/27 09:26 by 132.168.72.225
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