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how_to:web:importresultfiles [2015/07/23 09:53]
193.48.0.3
how_to:web:importresultfiles [2016/07/05 16:53] (current)
193.48.0.3
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 The first thing to do in your brand new project is to import Result Files. The first thing to do in your brand new project is to import Result Files.
  
-You can either double-click ​on your project ​to open its panelor right-click ​on your project ​in the project ​treeYou can then click on the "Import ​Result ​File" button+There are many ways to open the dedicated tab: 
 +  * Right-click ​the //Imported Search Results// node, then click //Import result File// 
 +  * Right-click the project ​nodethen click //Import result File// 
 +  * Right-click ​the project ​node, so that the project ​summary opensThen click //Import ​result ​File// in this panel toolbar.
  
-{{ :​how_to:​web:​import_file_menu_button.png?direct |}}+{{ :​how_to:​web:​dse_import_result_files.png?direct |}}
  
-A new tab opens and displays ​this panel:+A new tab opens and displays ​the following ​panel.\\ 
 +Click on //Select result files// to browse and select them. The left side of the browsing window is meant for the directories. When you click on one of them, its content is shown on the main panel. Choose one or multiple files then click //Ok//.
  
-{{ :​how_to:​web:​import_result_file.png?direct |}}+{{ :​how_to:​web:​dse_import_result_files_add_files.png?nolink&direct |}}
  
-It allows you to select Result Files and set up following parameters ​for the import proces:+Then configure the following parameters:
  
   * Parameters ​   * Parameters ​
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   * Decoy Parameters   * Decoy Parameters
     * Decoy Strategy: The type of decoy search which was performed. ​     * Decoy Strategy: The type of decoy search which was performed. ​
-    ** "No Decoy Database":​ if the search was performed against a target database only. +      ​* "No Decoy Database":​ if the search was performed against a target database only. 
-    ** "​Concatenated Decoy Database":​ if target and decoy sequences were merged into a single database. +      * "​Concatenated Decoy Database":​ if target and decoy sequences were merged into a single database. 
-    ** "​Software Decoy":​ if the "​Decoy"​ sequences were generated on-the-fly by your search engine.+      * "​Software Decoy":​ if the "​Decoy"​ sequences were generated on-the-fly by your search engine.
     * Protein Match Decoy Rule: for concatenated searches only. Select the rule to apply for the discrimination of target and decoy protein matches.     * Protein Match Decoy Rule: for concatenated searches only. Select the rule to apply for the discrimination of target and decoy protein matches.
  
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       * PTM Composition File: TODO       * PTM Composition File: TODO
  
 +\\
 +\\
 +You can now click on “Start Import” to launch the check and the import tasks.
  
- +{{ :how_to:​web:​dse_project_tree_tasks.png?200|}}
-In order to add files to your import selection, click on “Select Result File” to open the File Browser that will let you choose one or many result files to import: +
- +
-The left side let you browse the directories,​ and when you click on one of them, its content is shown on the main panel. Choose one or multiple files then click “Ok”. +
- +
-Back to the “Import Result File” window, you should now see your selection appear in the grid. +
-Choose the instrument and the peaklist software corresponding to your files, and then select a “Decoy Strategy”. You can now click on “Start Import” to launch the check and the import tasks.+
  
 The server will check your files first, then the import itself will be launched automatically. The server will check your files first, then the import itself will be launched automatically.
  
 You can follow the current state of your tasks by clicking on the Tasks button at the bottom of the Project Tree panel. You can follow the current state of your tasks by clicking on the Tasks button at the bottom of the Project Tree panel.
- 
-{{ :​how_to:​web:​simple_project_tree.png?​direct |}} 
  
 It will open the Tasks Panel, listing all the tasks you've been running in Proline. It will open the Tasks Panel, listing all the tasks you've been running in Proline.
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 {{ :​how_to:​web:​dse_import_finished.png?​direct |}} {{ :​how_to:​web:​dse_import_finished.png?​direct |}}
  
-All the Result Files you have imported are listed in the "Search Results" ​panel you can access by double-clicking the "Search Results" ​node in your project'​s ​tree.+All the Result Files you have imported are listed in the //​Imported ​Search Results// panel you can access by double-clicking the //​Imported ​Search Results// node in your project tree.
how_to/web/importresultfiles.1437638005.txt.gz · Last modified: 2015/07/23 09:53 by 193.48.0.3