how_to:web:createaggregate
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision | |||
|
how_to:web:createaggregate [2016/07/05 15:26] 193.48.0.3 |
how_to:web:createaggregate [2016/07/05 15:54] (current) 193.48.0.3 |
||
|---|---|---|---|
| Line 44: | Line 44: | ||
| {{:how_to:web:dse_newly_created_dataset.png?nolink&250 |}} | {{:how_to:web:dse_newly_created_dataset.png?nolink&250 |}} | ||
| - | Once your Identification Dataset has been created, you can see it on the tree, in the left side of the window. | + | Once your Identification Dataset has been created, you can see it on the tree, in the left side of the window. You may need to collapse and expand again the //Identifications// node to see it appear.\\ |
| The white icon let you known that it is not yet validated (becomes green when validated). | The white icon let you known that it is not yet validated (becomes green when validated). | ||
| Line 110: | Line 110: | ||
| | F078593.dat | OVEMB150205_18.raw.mgf | BRep 2 | UPS1 5fmol | | | F078593.dat | OVEMB150205_18.raw.mgf | BRep 2 | UPS1 5fmol | | ||
| + | **Note** | ||
| + | In most of the cases, the definitions go as following:\\ | ||
| + | - biological group = biological condition\\ | ||
| + | - biological sample = biological replicate\\ | ||
| + | - sample analysis = technical replicate\\ | ||
| + | However, these definitions are not strict and you can use and adapt the hierarchy to fit your needs. | ||
| + | * As shown previously (see [[#Example 1: multiple biological groups | example 1]]), choose the result set mapping property and add the //Biological group// column. | ||
| + | * In the toolbar box, now select the //Biological sample// annotation, and add it by clicking on //Add//. | ||
| + | * You can re-arrange the columns order to fit your data table: drag and drop the column headers to move them. | ||
| + | * Copy/paste the relevant columns of your table in the annotation editor. | ||
| + | |||
| + | {{ :how_to:web:dse_edit_annotations_bio_groups_bio_rep.png?nolink&800 |}} | ||
| + | |||
| + | \\ | ||
| + | |||
| + | {{ :how_to:web:dse_edit_annotations_bio_groups_bio_rep_created.png?nolink&300|}} | ||
| + | |||
| + | Click //OK// to register the annotations and see them in the creation panel.\\ | ||
| + | Then click //Create Dataset//.\\ | ||
| + | The generated dataset will have 3 levels of aggregation: | ||
| + | * top-level (name: chosen in creation panel) | ||
| + | * biological groups (names: from annotation editor column) | ||
| + | * biological samples (names: from annotation editor column) | ||
how_to/web/createaggregate.1467725201.txt.gz · Last modified: 2016/07/05 15:26 by 193.48.0.3
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
