how_to:studio:viewpsm
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how_to:studio:viewpsm [2014/01/20 16:32] 132.168.72.206 |
how_to:studio:viewpsm [2016/07/08 07:52] (current) 132.168.72.225 |
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| - | ====== Display peptides/PSM or Proteins of a Search Result ====== | + | ====== Display MS Queries, Peptides/PSM or Proteins of a Search Result ====== |
| - | ===== Functionnality Access ===== | + | ===== Functionality Access ===== |
| To display data of a Search Result: | To display data of a Search Result: | ||
| Line 8: | Line 8: | ||
| - right click on a Search Result | - right click on a Search Result | ||
| - | - click on the menu "Search Result >" and on the sub-menu "PSM" or "Proteins" | + | - click on the menu "Display Search Result >" and on the sub-menu "MSQueries" or "PSM" or "Proteins" |
| - | {{:how_to:studio:displaysearchresultpopupv2.png|}} | + | |
| + | {{:how_to:studio:displaysearchresultpopup.png|}} | ||
| + | |||
| + | |||
| + | ===== MSQueries Window ===== | ||
| + | |||
| + | If you click on MSQueries sub-menu, you obtain this window: | ||
| + | |||
| + | {{:how_to:studio:msquerysearchresult.png|}} | ||
| + | |||
| + | |||
| + | **Upper View**: list of MSQueries. | ||
| + | |||
| + | **Bottom Window**: list of all Peptides linked to the current selected MSQuery. | ||
| + | |||
| + | Note : Abbreviations used are listed [[how_to:studio:abbreviations|here]] | ||
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| If you click on PSM sub-menu, you obtain this window: | If you click on PSM sub-menu, you obtain this window: | ||
| - | {{:how_to:studio:displaysearchresultpsmdialogv2.png|}} | + | {{:how_to:studio:displaysearchresultpsmdialogv3.png|}} |
| - | Upper Window : list of all PSM/Peptides and Spectrum of the selected PSM. | + | **Upper View**: list of all PSM/Peptides. |
| - | Bottom Window : list of all Proteins containig the currently selected Peptide. | + | **Middle View**: Spectrum, Spectrum Error and Fragmentation Table of the selected PSM. If no annotation is displayed, you can generate Spectrum Matches by clicking on the according button |
| - | Note : Abbreviations used are listed [[:how_to:studio:studio:Abbreviations|here]]. | + | **Bottom Window**: list of all Proteins containing the currently selected Peptide. |
| + | |||
| + | Note : Abbreviations used are listed [[how_to:studio:abbreviations|here]] | ||
| ===== Proteins Window ===== | ===== Proteins Window ===== | ||
| Line 30: | Line 47: | ||
| If you click on Proteins sub-menu, you obtain this window: | If you click on Proteins sub-menu, you obtain this window: | ||
| - | {{:how_to:studio:displaysearchresultproteindialogv2.png|}} | + | {{:how_to:studio:displaysearchresultproteindialogv3.png|}} |
| - | Upper Window : list of all Proteins | ||
| - | Bottom Window : list of all Peptides of the selected Protein. | + | **Upper View**: list of all Proteins |
| - | Note : Abbreviations used are listed [[:how_to:studio:studio:Abbreviations|here]]. | + | **Bottom View**: list of all Peptides of the selected Protein. |
| + | Note: Abbreviations used are listed [[how_to:studio:abbreviations|here]] | ||
how_to/studio/viewpsm.1390231970.txt.gz · Last modified: 2014/01/20 16:32 by 132.168.72.206
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