how_to:studio:rsvalidation
Differences
This shows you the differences between two versions of the page.
| Both sides previous revision Previous revision Next revision | Previous revision | ||
|
how_to:studio:rsvalidation [2013/10/07 10:00] 132.168.72.206 |
how_to:studio:rsvalidation [2016/07/08 08:23] (current) 132.168.72.225 [Validation Dialog] |
||
|---|---|---|---|
| Line 1: | Line 1: | ||
| ====== How to validate a Search Result ====== | ====== How to validate a Search Result ====== | ||
| - | See description of [[prolineconcepts:rsvalidation|validation algorithm here]]. | + | See description of [[prolineconcepts:rsvalidation|Validation Algorithm]]. |
| Line 8: | Line 8: | ||
| {{:how_to:studio:validatepopupprolinev2.png|}} | {{:how_to:studio:validatepopupprolinev2.png|}} | ||
| - | To validate an Search Result: | + | To validate a Search Result: |
| - Select one or multiple Search Results to validate | - Select one or multiple Search Results to validate | ||
| Line 23: | Line 23: | ||
| {{:how_to:studio:validationdialogprolinev2.png|}} | {{:how_to:studio:validationdialogprolinev2.png|}} | ||
| - | In the Validation Dialog, fill the different Parameters : | + | In the Validation Dialog, fill the different Parameters (see [[prolineconcepts:rsvalidation|Validation description]]) : |
| - you can add multiple PSM Prefilter Parameters ( Rank, Length, Score, e-Value, Identity p-Value, Homology p-Value) by selecting them in the combobox and clicking on Add Button '+' | - you can add multiple PSM Prefilter Parameters ( Rank, Length, Score, e-Value, Identity p-Value, Homology p-Value) by selecting them in the combobox and clicking on Add Button '+' | ||
| - | - you can ensure a FDR on PSM which will reached according to the variable selected ( Score, e-Value, Identity p-Value, Homology p-Value ) | + | - you can ensure a FDR on PSM which will reached according to the variable selected ( Score, e-Value, Identity p-Value, Homology p-Value,... ) |
| - | - you can add a Protein Set Prefilter on Specitifc Peptides. | + | - you can add a Protein Set Prefilter on Specific Peptides. |
| - you can ensure a FDR on protein Sets. | - you can ensure a FDR on protein Sets. | ||
| - | - you can set the choice for the Typical Protein of a Protein Set by using a match string with wildcards ( * or ? ) on Protein Accession or Protein Description. | + | - you can set the choice for the Typical Protein of a Protein Set by using a match string with wildcards ( * or ? ) on Protein Accession or Protein Description. (see [[how_to:studio:changetypicalprot|]]) |
| - | Note : FDR can be used only for Search Results with Decoy Data. | + | Note: FDR can be used only for Search Results with Decoy Data. |
| Line 53: | Line 53: | ||
| {{:how_to:studio:validationdoneprolinev2.png|}} | {{:how_to:studio:validationdoneprolinev2.png|}} | ||
| - | When the validation is finished, the Identification Summaries are displayed with a green icon. | + | When the validation is finished, the icon becomes orange and blue. Orange part correspond to the Identification Summary. Blue is for the Search Result part. |
how_to/studio/rsvalidation.1381132844.txt.gz · Last modified: 2013/10/07 10:00 by 132.168.72.206
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 4.0 International
