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--- how_to:studio:mzscope [2015/04/03 11:24]
132.168.72.237 [Display MzDB Files (with mzScope)]
+++ how_to:studio:mzscope [2015/04/09 09:27] (current)
132.168.72.237 [Peakels]
@@ Line 9: / Line 9: @@
 ==== TIC or BPI chromatogram ====
 By default, the TIC chromatogram is displayed. You can click on "BPI" to see the best peak intensity graph.
-The "Extract" button allows you to extract a chromatogram on a specified mass.
 By clicking in the graph, you can see below the scan at the selected time.
 {{:how_to:studio:mzscope.png?|}}
@@ Line 16: / Line 16: @@
 {{:how_to:studio:mzscopemultifile.png?|}}
+You can extract a chromatogram at a given mass by entering the specified value in the panel above.
 ==== Scan ====
-[...//to be completed//...]
+{{:how_to:studio:mzscopescan.png?|}}
+You can navigate through the scans
+- by increasing or decreasing the scan Ids
+- by entering a retention time
+- by clicking the keys arrows on the keyboard (Ctrl+Arrows to keep the same ms level)
+By double clicking on the scan, the corresponding chromatogram will be displayed above (The Alt key or the check box "XIC overlay" allows you to overlay the chromatograms in the same graph).
+{{:how_to:studio:mzscopechromato.png?|}}
 ==== Peakels ====
-By clicking on a file, you can click on "Detect Peakels" in the popup menu.
+By selecting a file, you can click on "Detect Peakels" in the popup menu.
 {{:how_to:studio:mzscope_detectpeakels_menu.png?|}}
-A dialog allows you to choose the parameters of the peakels detection: the tolerance and eventually a range of m/z:
+A dialog allows you to choose the parameters of the peakels detection: the tolerance and eventually a range of m/z, or a m/z value:
 {{:how_to:studio:detectpeakelsparam.png?|}}
 The results are displayed in a table:
 {{:how_to:studio:mzscopepeakels.png?|}}
+You can double-click (or through the popup menu) on a row to display the peakel in the corresponding raw file:
+{{:how_to:studio:mzscopepeakelview.png?|}}

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