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how_to:studio:datamixer [2016/07/04 10:07]
132.168.72.206
how_to:studio:datamixer [2016/07/04 11:50] (current)
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 ===== Prostar Macro ===== ===== Prostar Macro =====
  
-{{:​how_to:​studio:​prostarcheminement.png?​200|}}+{{:​how_to:​studio:​prostarcheminement.png?​800|}}
  
 +1 : Add XIC Data to Data Analyzer from the Protein Set View.
 +
 +2 : Add Prostar Macro by a drag and drop and link XIC Data to the Macro
 +
 +3 : Process the Graph by clicking on the button
 +
 +During the process, the Data Analyzer will ask you settings for each function.
 +
 +4 : Filter is needed only if you want to remove contaminants. Settings can be
 +validated with no parameters if you don't need it.
 +
 +5 : Log is needed to log abundances (Data from Proline). For Data coming from Max Quant, data
 +is already logged.
 +
 +6 to 12 : follow the settings asked ( you can find some help in Prostar documentation,​ or information in corresponding functions.)
 +
 +During the process, results will be automatically displayed : calibration,​ scatter plot and FDR Result.
 +If you want to look at other results, right click on a function and select "​Display in New Window"​
 +
 +Prostar User Manual : http://​bioconductor.org/​packages/​release/​bioc/​vignettes/​Prostar/​inst/​doc/​Prostar_UserManual.pdf
 +
 +Prostar Tutorial : 
 +http://​bioconductor.org/​packages/​release/​bioc/​vignettes/​Prostar/​inst/​doc/​Prostar_Tutorial.pdf
 + 
  
how_to/studio/datamixer.1467619678.txt.gz · Last modified: 2016/07/04 10:07 by 132.168.72.206