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how_to:studio:datamixer [2016/07/01 16:02] 132.168.72.206 |
how_to:studio:datamixer [2016/07/04 11:50] (current) 132.168.72.206 |
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- | ===== Available Macros ===== | + | ===== Prostar Macro ===== |
+ | {{:how_to:studio:prostarcheminement.png?800|}} | ||
+ | 1 : Add XIC Data to Data Analyzer from the Protein Set View. | ||
+ | |||
+ | 2 : Add Prostar Macro by a drag and drop and link XIC Data to the Macro | ||
+ | |||
+ | 3 : Process the Graph by clicking on the button | ||
+ | |||
+ | During the process, the Data Analyzer will ask you settings for each function. | ||
+ | |||
+ | 4 : Filter is needed only if you want to remove contaminants. Settings can be | ||
+ | validated with no parameters if you don't need it. | ||
+ | |||
+ | 5 : Log is needed to log abundances (Data from Proline). For Data coming from Max Quant, data | ||
+ | is already logged. | ||
+ | |||
+ | 6 to 12 : follow the settings asked ( you can find some help in Prostar documentation, or information in corresponding functions.) | ||
+ | |||
+ | During the process, results will be automatically displayed : calibration, scatter plot and FDR Result. | ||
+ | If you want to look at other results, right click on a function and select "Display in New Window" | ||
+ | |||
+ | Prostar User Manual : http://bioconductor.org/packages/release/bioc/vignettes/Prostar/inst/doc/Prostar_UserManual.pdf | ||
+ | |||
+ | Prostar Tutorial : | ||
+ | http://bioconductor.org/packages/release/bioc/vignettes/Prostar/inst/doc/Prostar_Tutorial.pdf | ||
+ | |||