how_to:start
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how_to:start [2015/07/07 13:14] 130.79.67.200 [Save, import and export] |
how_to:start [2016/09/22 15:53] (current) 132.168.72.237 |
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| :!: Current documentation corresponds to Proline Release 1.1 | :!: Current documentation corresponds to Proline Release 1.1 | ||
| - | Note : Read the [[..:prolineConcepts:start|Concepts & Principles documentation]] to understand main concepts and algorithms used in Proline. | + | Note: Read the [[..:prolineConcepts:start|Concepts & Principles documentation]] to understand main concepts and algorithms used in Proline. |
| ===== Proline Admin ===== | ===== Proline Admin ===== | ||
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| * [[.:studio:createAggregate|Create a Dataset]] | * [[.:studio:createAggregate|Create a Dataset]] | ||
| * [[.:studio:importmascot|Import a Search Result]] | * [[.:studio:importmascot|Import a Search Result]] | ||
| - | * [[.:studio:delIdf|Delete Data]] | + | * [[.:studio:delIdf|Delete Data]] and clean project |
| * [[.:studio:connectionMgmt|Connection Management]] | * [[.:studio:connectionMgmt|Connection Management]] | ||
| ==== Display ==== | ==== Display ==== | ||
| - | * [[.:studio:viewPSM|Display Peptides/PSM or Proteins]] of a Search Result | + | * [[.:studio:viewPSM|Display MSQueries, Peptides/PSM or Proteins]] of a Search Result |
| - | * [[.:studio:viewProtSet|Display PSM, Peptides or Protein Sets]] of an Identification Summary | + | * [[.:studio:viewProtSet|Display MSQueries, PSM, Peptides, Protein Sets, PTM Protein Sites or Adjacency Matrices]] of an Identification Summary |
| - | * [[.:studio:RSproperties|Display Search Result & Identification Summary additional informations]] | + | * [[.:studio:RSproperties|Display Search Result & Identification Summary Properties]] |
| * [[.:studio:viewSpectralCount|Display Spectral Counts]] | * [[.:studio:viewSpectralCount|Display Spectral Counts]] | ||
| * [[.:studio:viewXIC|Display XIC]] | * [[.:studio:viewXIC|Display XIC]] | ||
| * [[.:studio:createuserdisplay|Create and Save a User Window]] | * [[.:studio:createuserdisplay|Create and Save a User Window]] | ||
| * [[.:studio:Abbreviations|List of Abbreviations]] | * [[.:studio:Abbreviations|List of Abbreviations]] | ||
| - | * [[.:studio:FrameToolbars|Frame Toolbars Functionnalities]] | + | * [[.:studio:FrameToolbars|Frame Toolbars Functionalities]] |
| * [[.:studio:filterTables|Filter tables]] | * [[.:studio:filterTables|Filter tables]] | ||
| * [[.:studio:searchTables|Search tables]] | * [[.:studio:searchTables|Search tables]] | ||
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| * [[.:studio:importMascot|Import Mascot/OMSSA/X!Tandem result file]] | * [[.:studio:importMascot|Import Mascot/OMSSA/X!Tandem result file]] | ||
| * [[.:studio:exportData|Export data]] | * [[.:studio:exportData|Export data]] | ||
| + | * [[.:studio:generateSpectrumMatches|Generate Spectrum Matches]] | ||
| ==== Algorithm and other operation ==== | ==== Algorithm and other operation ==== | ||
| Line 43: | Line 44: | ||
| * [[.:studio:changeTypicalProt|Change Typical Protein of a Protein Set]] | * [[.:studio:changeTypicalProt|Change Typical Protein of a Protein Set]] | ||
| * [[.:studio:merge|Merge]] | * [[.:studio:merge|Merge]] | ||
| - | * [[.:studio:datamixer|Data Mixer]] | + | * [[.:studio:datamixer|Data Analyzer]] |
| * [[.:studio:calculator|Calculator]] | * [[.:studio:calculator|Calculator]] | ||
| + | * [[.:studio:newPeaklistSoftware|Update Spectrum using Peaklist software]] | ||
| ==== Quantitation ==== | ==== Quantitation ==== | ||
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| * [[.:studio:xicProfilizer|Refine Protein Sets Abundances]] | * [[.:studio:xicProfilizer|Refine Protein Sets Abundances]] | ||
| + | ==== Other ==== | ||
| + | * [[.:studio:preferences|Preferences Dialog]] | ||
| ===== Proline Web ===== | ===== Proline Web ===== | ||
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| ==== Display ==== | ==== Display ==== | ||
| - | * [[.:web:viewPSM|Display peptides and/or PSM]] in identification result | + | * [[.:web:RSproperties|Display Identification Summary information]] |
| * [[.:web:viewProtSet|Display proteins sets]] in Identification Summary | * [[.:web:viewProtSet|Display proteins sets]] in Identification Summary | ||
| - | * [[.:web:RSproperties|Display Identification Summary additional informations]] | + | * [[.:web:viewPSM|Display peptides and/or PSM]] in identification result |
| + | |||
| + | * [[.:web:quantitationResults|Display Quantition results]] | ||
| + | |||
| ==== Save, import and export ==== | ==== Save, import and export ==== | ||
how_to/start.1436267686.txt.gz · Last modified: 2015/07/07 13:14 by 130.79.67.200
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