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userguide:fragmentmatchescontent

Fragment matches example

MS/MS fragments matches of AHVSFKPTVAQQR, Fixed modifications: Carbamidomethyl (C) (apply to specified residues or termini only). This corresponding mascot result for this peptide is shown below.

Here is the corresponding xml serialization of the fragmentation matches.

<list>
  <ionMatch label="b(2)" position="2" type="regular" charge="1">
    <moz>209.26846</moz>
    <calculatedMoz>209.10330203499998</calculatedMoz>
    <intensity>3201.0</intensity>
  </ionMatch>
  <ionMatch label="b(3)" position="3" type="regular" charge="1">
    <moz>308.16773</moz>
    <calculatedMoz>308.17171603500003</calculatedMoz>
    <intensity>12820.0</intensity>
  </ionMatch>
  <ionMatch label="b(4)" position="4" type="regular" charge="1">
    <moz>395.05538</moz>
    <calculatedMoz>395.203744035</calculatedMoz>
    <intensity>1561.0</intensity>
  </ionMatch>
  <ionMatch label="b(5)" position="5" type="regular" charge="1">
    <moz>542.15661</moz>
    <calculatedMoz>542.272158035</calculatedMoz>
    <intensity>11100.0</intensity>
  </ionMatch>
  <ionMatch label="b(6)" position="6" type="regular" charge="1">
    <moz>670.15962</moz>
    <calculatedMoz>670.367121035</calculatedMoz>
    <intensity>10050.0</intensity>
  </ionMatch>
  <ionMatch label="b(8)" position="8" type="regular" charge="1">
    <moz>868.57938</moz>
    <calculatedMoz>868.467564035</calculatedMoz>
    <intensity>1154.0</intensity>
  </ionMatch>
  <ionMatch label="b(9)" position="9" type="regular" charge="1">
    <moz>967.28257</moz>
    <calculatedMoz>967.535978035</calculatedMoz>
    <intensity>3820.0</intensity>
  </ionMatch>
  <ionMatch label="b(10)" position="10" type="regular" charge="1">
    <moz>1038.5933</moz>
    <calculatedMoz>1038.573092035</calculatedMoz>
    <intensity>2188.0</intensity>
  </ionMatch>
  <ionMatch label="b(11)" position="11" type="regular" charge="1">
    <moz>1166.6551</moz>
    <calculatedMoz>1166.631670035</calculatedMoz>
    <intensity>1732.0</intensity>
  </ionMatch>
  <ionMatch label="b(12)" position="12" type="regular" charge="1">
    <moz>1294.7834</moz>
    <calculatedMoz>1294.6902480350002</calculatedMoz>
    <intensity>1994.0</intensity>
  </ionMatch>
  <ionMatch label="b0(4)" position="4" type="regular" charge="1">
    <moz>377.03124</moz>
    <calculatedMoz>377.19317933499997</calculatedMoz>
    <intensity>3966.0</intensity>
  </ionMatch>
  <ionMatch label="b0(5)" position="5" type="regular" charge="1">
    <moz>524.20477</moz>
    <calculatedMoz>524.2615933349999</calculatedMoz>
    <intensity>17950.0</intensity>
  </ionMatch>
  <ionMatch label="b0(8)++" position="8" type="regular" charge="2">
    <moz>425.10414</moz>
    <calculatedMoz>425.732137685</calculatedMoz>
    <intensity>4583.0</intensity>
  </ionMatch>
  <ionMatch label="y(11)" position="11" type="regular" charge="1">
    <moz>1260.7476</moz>
    <calculatedMoz>1260.7058977350002</calculatedMoz>
    <intensity>13170.0</intensity>
  </ionMatch>
  <ionMatch label="y(10)" position="10" type="regular" charge="1">
    <moz>1161.5703</moz>
    <calculatedMoz>1161.6374837350002</calculatedMoz>
    <intensity>47750.0</intensity>
  </ionMatch>
  <ionMatch label="y(9)" position="9" type="regular" charge="1">
    <moz>1074.5745</moz>
    <calculatedMoz>1074.605455735</calculatedMoz>
    <intensity>18900.0</intensity>
  </ionMatch>
  <ionMatch label="y(8)" position="8" type="regular" charge="1">
    <moz>927.31641</moz>
    <calculatedMoz>927.5370417350003</calculatedMoz>
    <intensity>35810.0</intensity>
  </ionMatch>
  <ionMatch label="y(7)" position="7" type="regular" charge="1">
    <moz>799.41338</moz>
    <calculatedMoz>799.4420787350003</calculatedMoz>
    <intensity>117900.0</intensity>
  </ionMatch>
  <ionMatch label="y(4)" position="4" type="regular" charge="1">
    <moz>502.25168</moz>
    <calculatedMoz>502.27322173500033</calculatedMoz>
    <intensity>4378.0</intensity>
  </ionMatch>
  <ionMatch label="y(3)" position="3" type="regular" charge="1">
    <moz>431.09799</moz>
    <calculatedMoz>431.23610773500025</calculatedMoz>
    <intensity>3061.0</intensity>
  </ionMatch>
  <ionMatch label="y(12)++" position="12" type="regular" charge="2">
    <moz>699.41696</moz>
    <calculatedMoz>699.3860428850002</calculatedMoz>
    <intensity>6605.0</intensity>
  </ionMatch>
  <ionMatch label="y(11)++" position="11" type="regular" charge="2">
    <moz>630.95846</moz>
    <calculatedMoz>630.8565868850002</calculatedMoz>
    <intensity>27410.0</intensity>
  </ionMatch>
  <ionMatch label="y(9)++" position="9" type="regular" charge="2">
    <moz>538.46015</moz>
    <calculatedMoz>537.8063658850001</calculatedMoz>
    <intensity>6757.0</intensity>
  </ionMatch>
  <ionMatch label="y(6)++" position="6" type="regular" charge="2">
    <moz>352.27535</moz>
    <calculatedMoz>351.69829538500016</calculatedMoz>
    <intensity>1935.0</intensity>
  </ionMatch>
  <ionMatch label="y*(11)" position="11" type="regular" charge="1">
    <moz>1243.5976</moz>
    <calculatedMoz>1243.6793486300003</calculatedMoz>
    <intensity>1228.0</intensity>
  </ionMatch>
  <ionMatch label="y*(9)" position="9" type="regular" charge="1">
    <moz>1057.3492</moz>
    <calculatedMoz>1057.5789066300001</calculatedMoz>
    <intensity>1199.0</intensity>
  </ionMatch>
  <ionMatch label="y*(10)++" position="10" type="regular" charge="2">
    <moz>572.13397</moz>
    <calculatedMoz>572.8091053325002</calculatedMoz>
    <intensity>2410.0</intensity>
  </ionMatch>
  <ionMatch label="y0(10)" position="10" type="regular" charge="1">
    <moz>1143.7684</moz>
    <calculatedMoz>1143.6269190350001</calculatedMoz>
    <intensity>4052.0</intensity>
  </ionMatch>
  <ionMatch label="y0(9)" position="9" type="regular" charge="1">
    <moz>1057.3492</moz>
    <calculatedMoz>1056.594891035</calculatedMoz>
    <intensity>1199.0</intensity>
  </ionMatch>
  <ionMatch label="y0(8)" position="8" type="regular" charge="1">
    <moz>909.4175</moz>
    <calculatedMoz>909.5264770350003</calculatedMoz>
    <intensity>1805.0</intensity>
  </ionMatch>
  <ionMatch label="y0(7)" position="7" type="regular" charge="1">
    <moz>781.45301</moz>
    <calculatedMoz>781.4315140350003</calculatedMoz>
    <intensity>6107.0</intensity>
  </ionMatch>
  <ionMatch label="y0(10)++" position="10" type="regular" charge="2">
    <moz>572.13397</moz>
    <calculatedMoz>572.3170975350001</calculatedMoz>
    <intensity>2410.0</intensity>
  </ionMatch>
</list>
userguide/fragmentmatchescontent.txt · Last modified: 2011/04/12 11:52 by 132.168.73.105