Once validation have been done, the validated result could be exported to XLS file.

• To configure which sheet and which value will be exported, open Tools → Preference
• To export : File –> Export –> Identification Result –> to Excel

Exported file could contain following sheets and columns

Search settings and validation process informations …

Master/typical protein list

Protein hits details : Typical protein + PSM information

• emPAI = 10^(N observed / N observable )-1
  • observed : # observed peptides in protein (in this validated search result)
  • observable : # observable peptides in protein

===== protéines + ===== (because more than 65536 lines)

PSM details

===== peptide + ===== (because more than 65536 lines)

Protein groups detail : Typical protein + same set proteins + subset proteins

For development only …

• observed peptides (emPAI): # observed peptides in protein (in this validated search result)
• emPAI = 10^(N observed / N observable )-1
• emPAI (true observable): # observable peptides in protein