Differences

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--- userguide:pride_inspector [2012/03/13 17:48]
132.168.73.124
+++ userguide:pride_inspector [2012/03/14 10:42]
132.168.73.124
@@ Line 17: / Line 17: @@
 ==== Why do I not have the same number of peptides between hEIDI & Pride Inspector ? ====
 Peptide unicity in an hEIDI context is based on sequence & calculated mass.
+In Pride Inspector, a row exists for each peptide-protein match.
-In Pride Inspector, a peptide row exists for each peptide matching on a protein
+For example, the peptide ''FASFIDKVR'' matches on 15 Protein Groups (15 master proteins) and 7 other proteins.\\
+In hEIDI, this peptide is represented by one peptide node in the ''Peptide View''.\\
+In Pride Inspector, this peptide appears 22 times: one row for each protein match.
+So, the number of peptides in Pride Inspector is generally bigger than the peptide count in a User context.
 {{:userguide:prideinspector_2.png|}}

hEIDI