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userguide:pride_converter [2011/03/02 17:23] 132.168.74.230 |
userguide:pride_converter [2011/03/04 18:17] (current) 132.168.74.230 |
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===== Generate a PRIDE XML file from a Mascot DAT File ===== | ===== Generate a PRIDE XML file from a Mascot DAT File ===== | ||
- | :!:**Warning:** | + | :!:**Warning**:!: |
- | * **The purpose here is to create a PRIDE XML file from which we will only extract the header part (information about contact, experiment, sample, protocol, etc.). So, steps concerning the data itself (spectra selection, peptide and protein identification, etc.) are not at all described here.** | + | * **The purpose here is to __create a PRIDE XML file from which we will only extract the header part__ (information about contact, experiment, sample, protocol, etc.). So, steps concerning the data itself (spectra selection, peptide and protein identification, etc.) are not described here.** |
- | :!:**Tips:** | + | :!:**Tips**:!: |
* PRIDE Converter help is accessible from each panel of the wizard | * PRIDE Converter help is accessible from each panel of the wizard | ||
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* protein isoforms may appear. Select ''Always Select The First Isoform'', then ''Ok'' | * protein isoforms may appear. Select ''Always Select The First Isoform'', then ''Ok'' | ||
- | A file ''mascotDatFile_MyLabel_to_PRIDE_YYYYMMDD_123456.xml.gz'' is created in your ouput folder (where ''myLabel'' is the label you specified in Step 3) | + | A file ''mascotDatFile_MyLabel_to_PRIDE_YYYYMMDD_123456.xml.gz'' is created in your ouput folder (where ''myLabel'' is the label you specified in Step 3).\\ |
+ | Uncompress the file to obtain the ''mascotDatFile_MyLabel_to_PRIDE_YYYYMMDD_123456.xml'' file. |